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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029924 through 18771 annotations produced 1 hits


(CG4586):

Annotation Number : CG4586
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029924
Gbrowse : chrX:6863973-6866302 (+) // 100.0 //
Probeset : 1640002_at
Accessions : protein= NP_572371;, nucleotide= NM_132143;
Pathway : 0005777 // peroxisome // inferred from sequence or structural similarity /// 0005777 // peroxisome // inferred from elec
Interpro : "0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0003997 // acyl-CoA oxidase activ
FlyMine data for FBgn0029924.
BDGP gene expression has embryonic in situ data for CG4586: 7 pix of staining in 4 body parts.
Homophila reports that CG4586 is a close match (4e-117) to human gene ACOX;ACOX1;SCOX (NP_009223), a gene associated with Peroxisomal acyl-CoA oxidase deficiency, 264470 (3).
BioGrid reports that CG4586 interacts with CG4832 CG4887 CG6357 CG6521 CG6660 CG8498 CG8929 CG9118 .
VDRC has 1 RNAi stocks for FBgn0029924 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 21 of 4 0.10Down
Head5 ± 10 of 4 0.00Down
Eye2 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland2 ± 10 of 4 0.02Down
Crop2 ± 10 of 4 0.00Down
Midgut2 ± 10 of 4 0.00Down
Tubule32 ± 54 of 4 0.30Down
Hindgut1 ± 00 of 4 0.00Down
Heart2 ± 10 of 4 0.02Down
Fat body1 ± 10 of 4 0.01Down
Ovary234 ± 144 of 4 2.00Up
Testis0 ± 00 of 4 0.00Down
Male accessory glands6 ± 20 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca1 ± 00 of 4 0.01Down
Adult carcass5 ± 30 of 4 0.00Down
Larval CNS8 ± 00 of 4 0.07Down
Larval Salivary gland20 ± 10 of 4 0.17Down
Larval midgut4 ± 10 of 4 0.04Down
Larval tubule306 ± 414 of 4 2.60Up
Larval hindgut10 ± 30 of 4 0.08Down
Larval fat body590 ± 824 of 4 4.90Up
Larval trachea9 ± 12 of 4 0.08Down
Larval carcass18 ± 41 of 4 0.15Down
S2 cells (growing)11 ± 10 of 4 0.09Down
Whole fly119 ± 54 of 4

Looking for FBgn0029924. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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