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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029928 through 18771 annotations produced 1 hits



(CG3032):

Annotation Number : CG3032
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029928
Gbrowse : chrX:6906268-6907695 (-) // 100.0 //
Probeset : 1628124_at
Accessions : protein= NP_572376;, nucleotide= NM_132148;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0029928.
Homophila reports that CG3032 is a close match (3e-12) to human gene TNDM1;ZFP57 (NP_001103279), a gene associated with Diabetes mellitus, transient neonatal, 1, 601410 (3).
BioGrid reports that CG3032 interacts with CG3771 .
VDRC has 1 RNAi stocks for FBgn0029928 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 24 of 4 0.90None
Head14 12 of 4 0.70Down
Eye12 03 of 4 0.57Down
Thoracicoabdominal ganglion19 04 of 4 0.90None
Salivary gland23 23 of 4 1.05None
Crop18 24 of 4 0.80None
Midgut9 11 of 4 0.40Down
Tubule5 00 of 4 0.20Down
Hindgut6 00 of 4 0.30Down
Heart7 12 of 4 0.33Down
Fat body6 32 of 4 0.29Down
Ovary46 14 of 4 2.00Up
Testis9 13 of 4 0.40Down
Male accessory glands26 03 of 4 1.20Up
Virgin spermatheca10 03 of 4 0.46Down
Mated spermatheca12 03 of 4 0.56Down
Adult carcass13 12 of 4 0.60Down
Larval CNS39 34 of 4 1.74Up
Larval Salivary gland13 12 of 4 0.61Down
Larval midgut13 23 of 4 0.59Down
Larval tubule9 10 of 4 0.40Down
Larval hindgut11 13 of 4 0.52Down
Larval fat body12 22 of 4 0.60Down
Larval trachea12 14 of 4 0.57Down
Larval carcass12 14 of 4 0.57Down
S2 cells (growing)22 24 of 4 0.98None
Whole fly22 14 of 4

Looking for FBgn0029928. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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