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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029929 through 18771 annotations produced 1 hits



(CG4593):

Annotation Number : CG4593
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029929
Gbrowse : chrX:6907935-6909045 (+) // 100.0 //
Probeset : 1623109_at
Accessions : protein= NP_572377;, nucleotide= NM_132149;
FlyMine data for FBgn0029929.
VDRC has 2 RNAi stocks for FBgn0029929 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain61 ± 24 of 4 0.40Down
Head88 ± 34 of 4 0.50Down
Eye88 ± 24 of 4 0.54Down
Thoracicoabdominal ganglion56 ± 34 of 4 0.30Down
Salivary gland112 ± 74 of 4 0.68Down
Crop122 ± 44 of 4 0.70Down
Midgut144 ± 44 of 4 0.90Down
Tubule113 ± 164 of 4 0.70Down
Hindgut90 ± 14 of 4 0.50Down
Heart114 ± 14 of 4 0.69Down
Fat body157 ± 264 of 4 0.95None
Ovary314 ± 24 of 4 1.90Up
Testis57 ± 34 of 4 0.30Down
Male accessory glands170 ± 94 of 4 1.00None
Virgin spermatheca200 ± 44 of 4 1.21Up
Mated spermatheca211 ± 74 of 4 1.28Up
Adult carcass90 ± 34 of 4 0.60Down
Larval CNS220 ± 144 of 4 1.34Up
Larval Salivary gland279 ± 174 of 4 1.70Up
Larval midgut120 ± 94 of 4 0.73Down
Larval tubule142 ± 64 of 4 0.90Down
Larval hindgut137 ± 34 of 4 0.83Down
Larval fat body161 ± 134 of 4 1.00None
Larval trachea182 ± 204 of 4 1.10None
Larval carcass135 ± 104 of 4 0.82None
S2 cells (growing)44 ± 14 of 4 0.27Down
Whole fly164 ± 64 of 4

Looking for FBgn0029929. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime