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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029931 through 18771 annotations produced 1 hits



(CG14427):

Annotation Number : CG14427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029931
Gbrowse : chrX:6934640-6935802 (+) // 100.0 //
Probeset : 1627411_at
Accessions : protein= NP_572379;, nucleotide= NM_132151;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029931.
BDGP gene expression has embryonic in situ data for CG14427: 70 pix of staining in 11 body parts.
BioGrid reports that CG14427 interacts with CG6416 CG3021 .
VDRC has 2 RNAi stocks for FBgn0029931 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.40None
Head1 ± 00 of 4 0.70None
Eye0 ± 00 of 4 0.47None
Thoracicoabdominal ganglion1 ± 00 of 4 1.00None
Salivary gland7 ± 10 of 4 4.63None
Crop2 ± 00 of 4 1.30None
Midgut1 ± 00 of 4 0.80None
Tubule2 ± 00 of 4 1.60Up
Hindgut2 ± 00 of 4 1.90None
Heart0 ± 00 of 4 0.48None
Fat body1 ± 00 of 4 0.85None
Ovary0 ± 00 of 4 0.50None
Testis2 ± 00 of 4 1.40None
Male accessory glands3 ± 10 of 4 2.00None
Virgin spermatheca1 ± 00 of 4 0.74None
Mated spermatheca1 ± 00 of 4 0.84None
Adult carcass1 ± 00 of 4 1.20None
Larval CNS1 ± 00 of 4 1.11None
Larval Salivary gland4 ± 00 of 4 2.55Up
Larval midgut1 ± 00 of 4 0.94None
Larval tubule2 ± 00 of 4 1.40None
Larval hindgut2 ± 00 of 4 1.69None
Larval fat body4 ± 10 of 4 2.90None
Larval trachea1 ± 00 of 4 0.76None
Larval carcass2 ± 00 of 4 1.40None
S2 cells (growing)1 ± 00 of 4 0.89None
Whole fly1 ± 00 of 4

Looking for FBgn0029931. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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