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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029932 through 18771 annotations produced 1 hits



(CG4607):

Annotation Number : CG4607
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029932
Gbrowse : chrX:6963445-6966722 (+) // 100.0 //
Probeset : 1631561_s_at
Accessions : protein= NP_572380; /// NP_727159;, nucleotide= NM_132152; /// NM_167109;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0022891 // substrate-specific transmembrane t
FlyMine data for FBgn0029932.
BDGP gene expression has embryonic in situ data for CG4607: 4 pix of staining in 1 body parts.
Homophila reports that CG4607 is a close match (5e-16) to human gene SLC2A4;GLUT4 (NP_001033), a gene associated with {Diabetes mellitus, noninsulin-dependent} (3).
VDRC has 2 RNAi stocks for FBgn0029932 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 14 of 4 0.30Down
Head155 114 of 4 1.80Up
Eye170 64 of 4 2.01Up
Thoracicoabdominal ganglion30 24 of 4 0.40Down
Salivary gland220 174 of 4 2.60Up
Crop72 64 of 4 0.90None
Midgut822 514 of 4 9.70Up
Tubule63 134 of 4 0.80None
Hindgut36 54 of 4 0.40Down
Heart109 34 of 4 1.29None
Fat body272 124 of 4 3.22Up
Ovary5 13 of 4 0.10Down
Testis30 44 of 4 0.40Down
Male accessory glands66 74 of 4 0.80None
Virgin spermatheca300 84 of 4 3.54Up
Mated spermatheca175 154 of 4 2.07Up
Adult carcass191 84 of 4 2.30Up
Larval CNS7 14 of 4 0.08Down
Larval Salivary gland157 194 of 4 1.86Up
Larval midgut216 104 of 4 2.55Up
Larval tubule316 314 of 4 3.70Up
Larval hindgut88 84 of 4 1.05None
Larval fat body132 224 of 4 1.60None
Larval trachea33 54 of 4 0.40Down
Larval carcass170 454 of 4 2.01None
S2 cells (growing)2 00 of 4 0.03Down
Whole fly84 124 of 4

Looking for FBgn0029932. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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