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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029937 through 18771 annotations produced 1 hits


Annotation Number : CG8300
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029937
Gbrowse : chrX:6998932-7000378 (+) // 100.0 //
Probeset : 1635581_at
Accessions : protein= NP_572384;, nucleotide= NM_132156;
FlyMine data for FBgn0029937.
BDGP gene expression has embryonic in situ data for CG8300: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0029937 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain111 64 of 4 2.70Up
Head80 14 of 4 1.90Up
Eye324 204 of 4 7.84Up
Thoracicoabdominal ganglion88 24 of 4 2.10Up
Salivary gland19 31 of 4 0.47Down
Crop60 34 of 4 1.50Up
Midgut54 24 of 4 1.30None
Tubule49 74 of 4 1.20None
Hindgut42 34 of 4 1.00None
Heart69 94 of 4 1.68Up
Fat body23 44 of 4 0.57Down
Ovary65 24 of 4 1.60Up
Testis32 14 of 4 0.80None
Male accessory glands46 44 of 4 1.10None
Virgin spermatheca18 14 of 4 0.43Down
Mated spermatheca23 14 of 4 0.57Down
Adult carcass32 14 of 4 0.80None
Larval CNS165 144 of 4 3.99Up
Larval Salivary gland57 34 of 4 1.38None
Larval midgut56 14 of 4 1.36None
Larval tubule30 34 of 4 0.70None
Larval hindgut61 34 of 4 1.47Up
Larval fat body36 34 of 4 0.90None
Larval trachea127 74 of 4 3.07Up
Larval carcass54 14 of 4 1.33None
S2 cells (growing)162 114 of 4 3.93Up
Whole fly41 54 of 4

Looking for FBgn0029937. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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