FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0029939 through 18771 annotations produced 4 hits

(CG9650):

Annotation Number : S.CX000782
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029939
Gbrowse : chrX:7110970-7111921 (+) // 92.59 //
Probeset : 1627630_s_at
Accessions : protein= NP_001096899; /// NP_001096900;, nucleotide= NM_001103429; /// NM_001103430;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0029939.
TRiP has 2 RNAi stocks for FBgn0029939 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029939 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 0	0 of 4	0.60	None
Head	8 ± 1	0 of 4	0.80	None
Eye	7 ± 1	1 of 4	0.64	None
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.30	Down
Salivary gland	16 ± 3	0 of 4	1.43	None
Crop	10 ± 0	1 of 4	0.90	None
Midgut	22 ± 2	0 of 4	2.00	Up
Tubule	5 ± 0	0 of 4	0.50	Down
Hindgut	9 ± 1	1 of 4	0.80	None
Heart	12 ± 2	2 of 4	1.07	None
Fat body	11 ± 5	0 of 4	1.03	None
Ovary	4 ± 0	0 of 4	0.40	Down
Testis	7 ± 1	1 of 4	0.60	None
Male accessory glands	22 ± 4	0 of 4	2.00	None
Virgin spermatheca	9 ± 1	0 of 4	0.81	None
Mated spermatheca	8 ± 2	0 of 4	0.76	None
Adult carcass	23 ± 5	1 of 4	2.10	None
Larval CNS	1 ± 1	0 of 4	0.15	Down
Larval Salivary gland	9 ± 2	0 of 4	0.81	None
Larval midgut	19 ± 1	0 of 4	1.73	Up
Larval tubule	6 ± 1	0 of 4	0.50	None
Larval hindgut	5 ± 0	0 of 4	0.45	Down
Larval fat body	2 ± 0	0 of 4	0.20	Down
Larval trachea	4 ± 1	0 of 4	0.38	Down
Larval carcass	7 ± 2	0 of 4	0.63	None
S2 cells (growing)	7 ± 2	0 of 4	0.70	None
Whole fly	11 ± 2	0 of 4

(CG9650):

Annotation Number : S.CX000782
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029939
Gbrowse : chrX:7110970-7111921 (+) // 92.59 //
Probeset : 1629037_at
Accessions : protein= NP_001096899; /// NP_001096900;, nucleotide= NM_001103429; /// NM_001103430;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0029939.
TRiP has 2 RNAi stocks for FBgn0029939 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029939 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	2.30	None
Head	3 ± 1	0 of 4	3.10	None
Eye	8 ± 2	1 of 4	8.26	Up
Thoracicoabdominal ganglion	1 ± 1	0 of 4	1.70	None
Salivary gland	2 ± 0	0 of 4	2.33	None
Crop	1 ± 0	0 of 4	1.20	None
Midgut	1 ± 0	0 of 4	1.30	None
Tubule	1 ± 0	0 of 4	1.70	Up
Hindgut	0 ± 0	0 of 4	0.80	None
Heart	4 ± 2	0 of 4	4.33	None
Fat body	1 ± 0	0 of 4	1.90	None
Ovary	0 ± 0	0 of 4	0.80	None
Testis	2 ± 1	0 of 4	2.40	None
Male accessory glands	1 ± 0	0 of 4	2.00	None
Virgin spermatheca	1 ± 0	0 of 4	1.54	None
Mated spermatheca	1 ± 0	0 of 4	1.59	None
Adult carcass	2 ± 0	0 of 4	2.80	None
Larval CNS	0 ± 0	0 of 4	0.64	Down
Larval Salivary gland	2 ± 1	0 of 4	2.59	None
Larval midgut	2 ± 0	0 of 4	2.85	Up
Larval tubule	1 ± 0	0 of 4	1.20	None
Larval hindgut	1 ± 0	0 of 4	1.00	None
Larval fat body	3 ± 1	0 of 4	3.40	None
Larval trachea	2 ± 2	0 of 4	2.92	None
Larval carcass	1 ± 0	0 of 4	1.13	None
S2 cells (growing)	1 ± 0	0 of 4	1.62	Up
Whole fly	1 ± 0	0 of 4

(CG9650):

Annotation Number : CG9650
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029939
Gbrowse : chrX:7087108-7134453 (+) // 100.0 //
Probeset : 1639550_a_at
Accessions : protein= NP_001096899; /// NP_001096900;, nucleotide= NM_001103429; /// NM_001103430;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0029939.
Homophila reports that CG9650 is a close match (3e-11) to human gene MRX45;ZNF81 (NP_009068), a gene associated with Mental retardation, X-linked 45, 300498 (3).
TRiP has 2 RNAi stocks for FBgn0029939 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029939 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	90 ± 2	4 of 4	9.30	Up
Head	13 ± 1	3 of 4	1.30	None
Eye	16 ± 2	4 of 4	1.74	Up
Thoracicoabdominal ganglion	20 ± 2	3 of 4	2.10	Up
Salivary gland	16 ± 4	0 of 4	1.70	None
Crop	6 ± 2	1 of 4	0.70	None
Midgut	5 ± 1	0 of 4	0.60	None
Tubule	14 ± 2	2 of 4	1.50	Up
Hindgut	13 ± 1	3 of 4	1.40	None
Heart	3 ± 1	0 of 4	0.32	Down
Fat body	10 ± 4	2 of 4	1.07	None
Ovary	12 ± 1	3 of 4	1.30	None
Testis	3 ± 1	1 of 4	0.40	Down
Male accessory glands	3 ± 1	0 of 4	0.40	Down
Virgin spermatheca	32 ± 2	4 of 4	3.38	Up
Mated spermatheca	36 ± 0	4 of 4	3.76	Up
Adult carcass	5 ± 1	0 of 4	0.50	Down
Larval CNS	97 ± 12	4 of 4	10.09	Up
Larval Salivary gland	92 ± 8	4 of 4	9.55	Up
Larval midgut	16 ± 4	3 of 4	1.74	None
Larval tubule	50 ± 3	4 of 4	5.20	Up
Larval hindgut	27 ± 4	4 of 4	2.83	Up
Larval fat body	3 ± 0	0 of 4	0.30	Down
Larval trachea	12 ± 1	4 of 4	1.32	None
Larval carcass	4 ± 1	0 of 4	0.42	Down
S2 cells (growing)	1 ± 0	0 of 4	0.20	Down
Whole fly	9 ± 1	4 of 4

(CG9650):

Annotation Number : S.CX000784
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029939
Gbrowse : chrX:7120964-7126538 (+) // 100.0 //
Probeset : 1625641_s_at
Accessions : protein= NP_001096899; /// NP_001096900;, nucleotide= NM_001103429; /// NM_001103430;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0029939.
TRiP has 2 RNAi stocks for FBgn0029939 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029939 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 2	0 of 4	0.80	None
Head	7 ± 2	0 of 4	0.90	None
Eye	2 ± 2	0 of 4	0.32	None
Thoracicoabdominal ganglion	7 ± 3	0 of 4	0.90	None
Salivary gland	20 ± 6	0 of 4	2.40	None
Crop	12 ± 4	1 of 4	1.40	None
Midgut	10 ± 1	0 of 4	1.20	None
Tubule	4 ± 0	0 of 4	0.60	Down
Hindgut	8 ± 1	0 of 4	0.90	None
Heart	1 ± 0	0 of 4	0.21	None
Fat body	15 ± 9	1 of 4	1.83	None
Ovary	9 ± 0	0 of 4	1.10	None
Testis	3 ± 1	0 of 4	0.40	None
Male accessory glands	20 ± 3	0 of 4	2.30	Up
Virgin spermatheca	11 ± 2	0 of 4	1.34	None
Mated spermatheca	14 ± 2	0 of 4	1.60	None
Adult carcass	21 ± 3	1 of 4	2.50	Up
Larval CNS	15 ± 2	3 of 4	1.73	None
Larval Salivary gland	12 ± 0	0 of 4	1.41	None
Larval midgut	6 ± 2	0 of 4	0.78	None
Larval tubule	8 ± 2	0 of 4	1.00	None
Larval hindgut	11 ± 3	1 of 4	1.26	None
Larval fat body	13 ± 1	0 of 4	1.60	None
Larval trachea	3 ± 2	0 of 4	0.37	None
Larval carcass	13 ± 3	1 of 4	1.57	None
S2 cells (growing)	17 ± 1	0 of 4	2.05	Up
Whole fly	8 ± 2	0 of 4

Looking for FBgn0029939. 4 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720