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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029940 through 18771 annotations produced 1 hits



(CG1958):

Annotation Number : CG1958
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029940
Gbrowse : chrX:7160936-7161914 (+) // 100.0 //
Probeset : 1638870_at
Accessions : protein= NP_572386;, nucleotide= NM_132158;
Interpro : 0042802 // identical protein binding // inferred from physical interaction
FlyMine data for FBgn0029940.
BDGP gene expression has embryonic in situ data for CG1958: 4 pix of staining in 1 body parts.
BioGrid reports that CG1958 interacts with CG1958 CG3052 CG6380 .
VDRC has 2 RNAi stocks for FBgn0029940 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 01 of 4 0.00Down
Head4 ± 20 of 4 0.00Down
Eye4 ± 21 of 4 0.03Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland24 ± 12 of 4 0.18Down
Crop6 ± 21 of 4 0.00Down
Midgut8 ± 00 of 4 0.10Down
Tubule7 ± 10 of 4 0.10Down
Hindgut6 ± 11 of 4 0.00Down
Heart3 ± 10 of 4 0.02Down
Fat body22 ± 162 of 4 0.16Down
Ovary1 ± 00 of 4 0.00Down
Testis1612 ± 94 of 411.60Up
Male accessory glands4 ± 20 of 4 0.00Down
Virgin spermatheca35 ± 54 of 4 0.26Down
Mated spermatheca47 ± 153 of 4 0.34Down
Adult carcass10 ± 20 of 4 0.10Down
Larval CNS43 ± 84 of 4 0.31Down
Larval Salivary gland3 ± 11 of 4 0.03Down
Larval midgut3 ± 00 of 4 0.02Down
Larval tubule7 ± 01 of 4 0.10Down
Larval hindgut6 ± 23 of 4 0.05Down
Larval fat body174 ± 954 of 4 1.30None
Larval trachea8 ± 101 of 4 0.06Down
Larval carcass3 ± 00 of 4 0.02Down
S2 cells (growing)4 ± 11 of 4 0.03Down
Whole fly139 ± 114 of 4

Looking for FBgn0029940. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime