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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029943 through 18771 annotations produced 1 hits



Autophagy-specific gene 5 (Atg5):

Annotation Number : CG1643
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029943
Gbrowse : chrX:7208647-7217773 (-) // 100.0 //
Probeset : 1641621_at
Accessions : protein= NP_572390;, nucleotide= NM_132162;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement /
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029943.
BDGP gene expression has embryonic in situ data for CG1643: 4 pix of staining in 1 body parts.
BioGrid reports that CG1643 interacts with CG31033 CG9025 CG17337 CG1954 CG31716 CG3557 CG3821 CG5045 CG6022 CG6343 CG6779 CG9244 CG9771 .
TRiP has 2 RNAi stocks for FBgn0029943 available for purchase.
VDRC has 1 RNAi stocks for FBgn0029943 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain123 ± 34 of 4 1.50Up
Head62 ± 54 of 4 0.80None
Eye49 ± 24 of 4 0.61Down
Thoracicoabdominal ganglion66 ± 34 of 4 0.80None
Salivary gland105 ± 44 of 4 1.29Up
Crop67 ± 34 of 4 0.80None
Midgut124 ± 74 of 4 1.50Up
Tubule86 ± 14 of 4 1.10Up
Hindgut96 ± 34 of 4 1.20None
Heart62 ± 44 of 4 0.76Down
Fat body59 ± 114 of 4 0.73Down
Ovary160 ± 54 of 4 2.00Up
Testis16 ± 14 of 4 0.20Down
Male accessory glands58 ± 14 of 4 0.70Down
Virgin spermatheca26 ± 14 of 4 0.33Down
Mated spermatheca38 ± 44 of 4 0.47Down
Adult carcass47 ± 14 of 4 0.60Down
Larval CNS145 ± 204 of 4 1.78Up
Larval Salivary gland102 ± 64 of 4 1.26None
Larval midgut128 ± 54 of 4 1.57Up
Larval tubule175 ± 114 of 4 2.20Up
Larval hindgut120 ± 74 of 4 1.47Up
Larval fat body91 ± 154 of 4 1.10None
Larval trachea86 ± 84 of 4 1.06None
Larval carcass92 ± 84 of 4 1.13None
S2 cells (growing)141 ± 64 of 4 1.73Up
Whole fly81 ± 54 of 4

Looking for FBgn0029943. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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