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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029944 through 18771 annotations produced 1 hits

Downstream of kinase (Dok):

Annotation Number : CG2079
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029944
Gbrowse : chrX:7218250-7222844 (+) // 99.89 //
Probeset : 1635618_at
Accessions : protein= NP_572391;, nucleotide= NM_132163;
Pathway : elongation of leading edge cells // inferred from mutant phenotype /// 0007476 // imaginal disc-derived wing morphogene
Interpro : thorax closure // inferred from mutant phenotype"
FlyMine data for FBgn0029944.
BDGP gene expression has embryonic in situ data for CG2079: 24 pix of staining in 4 body parts.
BioGrid reports that CG2079 interacts with CG7873 CG7524 .
VDRC has 2 RNAi stocks for FBgn0029944 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 34 of 4 0.30Down
Head76 44 of 4 0.50Down
Eye39 44 of 4 0.24Down
Thoracicoabdominal ganglion39 34 of 4 0.20Down
Salivary gland149 144 of 4 0.89None
Crop151 64 of 4 0.90None
Midgut65 24 of 4 0.40Down
Tubule122 34 of 4 0.70Down
Hindgut182 74 of 4 1.10None
Heart57 54 of 4 0.35Down
Fat body128 254 of 4 0.77None
Ovary373 34 of 4 2.20Up
Testis28 34 of 4 0.20Down
Male accessory glands55 24 of 4 0.30Down
Virgin spermatheca63 34 of 4 0.38Down
Mated spermatheca101 114 of 4 0.61Down
Adult carcass97 74 of 4 0.60Down
Larval CNS192 164 of 4 1.16None
Larval Salivary gland137 174 of 4 0.83None
Larval midgut103 84 of 4 0.62Down
Larval tubule211 64 of 4 1.30Up
Larval hindgut283 124 of 4 1.70Up
Larval fat body84 24 of 4 0.50Down
Larval trachea494 114 of 4 2.96Up
Larval carcass303 204 of 4 1.82Up
S2 cells (growing)252 144 of 4 1.51Up
Whole fly167 94 of 4

Looking for FBgn0029944. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime