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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029947 through 18771 annotations produced 1 hits



(CG1999):

Annotation Number : CG1999
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029947
Gbrowse : chrX:7252828-7254101 (+) // 100.0 //
Probeset : 1636442_at
Accessions : protein= NP_572394;, nucleotide= NM_132166;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029947.
BDGP gene expression has embryonic in situ data for CG1999: 4 pix of staining in 1 body parts.
BioGrid reports that CG1999 interacts with CG33203 CG5105 CG8580 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 12 of 4 0.00Down
Head4 ± 00 of 4 0.00Down
Eye4 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.00Down
Salivary gland6 ± 10 of 4 0.04Down
Crop4 ± 10 of 4 0.00Down
Midgut6 ± 10 of 4 0.00Down
Tubule3 ± 10 of 4 0.00Down
Hindgut2 ± 10 of 4 0.00Down
Heart2 ± 00 of 4 0.01Down
Fat body4 ± 40 of 4 0.03Down
Ovary2 ± 00 of 4 0.00Down
Testis1564 ± 474 of 410.40Up
Male accessory glands6 ± 10 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.01Down
Mated spermatheca4 ± 10 of 4 0.03Down
Adult carcass15 ± 40 of 4 0.10Down
Larval CNS3 ± 21 of 4 0.03Down
Larval Salivary gland2 ± 00 of 4 0.02Down
Larval midgut4 ± 10 of 4 0.03Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.02Down
Larval fat body169 ± 894 of 4 1.10None
Larval trachea10 ± 111 of 4 0.07Down
Larval carcass3 ± 10 of 4 0.02Down
S2 cells (growing)4 ± 10 of 4 0.03Down
Whole fly150 ± 134 of 4

Looking for FBgn0029947. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime