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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029959 through 18771 annotations produced 1 hits



Rab39 (Rab39):

Annotation Number : CG12156
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029959
Gbrowse : chrX:7628958-7630510 (+) // 100.0 //
Probeset : 1628482_at
Accessions : protein= NP_572405;, nucleotide= NM_132177;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0029959.
BDGP gene expression has embryonic in situ data for CG12156: 4 pix of staining in 1 body parts.
Homophila reports that CG12156 is a close match (6e-11) to human gene RAC2 (NP_002863), a gene associated with Neutrophil immunodeficiency syndrome, 608203 (3).
TRiP has 1 RNAi stocks for FBgn0029959 available for purchase.
VDRC has 3 RNAi stocks for FBgn0029959 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain254 54 of 4 1.50Up
Head268 174 of 4 1.60Up
Eye318 104 of 4 1.89Up
Thoracicoabdominal ganglion202 84 of 4 1.20Up
Salivary gland187 84 of 4 1.11None
Crop323 134 of 4 1.90Up
Midgut170 74 of 4 1.00None
Tubule230 94 of 4 1.40Up
Hindgut276 34 of 4 1.60Up
Heart330 214 of 4 1.96Up
Fat body343 244 of 4 2.03Up
Ovary241 34 of 4 1.40Up
Testis56 14 of 4 0.30Down
Male accessory glands110 74 of 4 0.70Down
Virgin spermatheca382 174 of 4 2.27Up
Mated spermatheca175 154 of 4 1.04None
Adult carcass291 134 of 4 1.70Up
Larval CNS183 124 of 4 1.09None
Larval Salivary gland105 14 of 4 0.63Down
Larval midgut153 84 of 4 0.91None
Larval tubule579 124 of 4 3.40Up
Larval hindgut163 74 of 4 0.97None
Larval fat body148 174 of 4 0.90None
Larval trachea135 74 of 4 0.80Down
Larval carcass137 114 of 4 0.81None
S2 cells (growing)329 124 of 4 1.95Up
Whole fly169 74 of 4

Looking for FBgn0029959. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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