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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029963 through 18771 annotations produced 1 hits



(CG10920):

Annotation Number : CG10920
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029963
Gbrowse : chrX:7746534-7748246 (-) // 100.0 //
Probeset : 1638483_at
Accessions : protein= NP_572408;, nucleotide= NM_132180;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from ele
Interpro : 0005488 // binding // inferred from electronic annotation /// 0022857 // transmembrane transporter activity // inferred
FlyMine data for FBgn0029963.
TRiP has 2 RNAi stocks for FBgn0029963 available for purchase.
VDRC has 3 RNAi stocks for FBgn0029963 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10Down
Head4 10 of 4 0.10Down
Eye2 10 of 4 0.08Down
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland7 20 of 4 0.21Down
Crop9 21 of 4 0.30Down
Midgut2 10 of 4 0.10Down
Tubule3 00 of 4 0.10Down
Hindgut4 10 of 4 0.10Down
Heart0 00 of 4 0.02Down
Fat body12 31 of 4 0.36Down
Ovary2 10 of 4 0.10Down
Testis460 144 of 413.50Up
Male accessory glands10 11 of 4 0.30Down
Virgin spermatheca11 11 of 4 0.33Down
Mated spermatheca15 41 of 4 0.44Down
Adult carcass5 10 of 4 0.20Down
Larval CNS7 20 of 4 0.21Down
Larval Salivary gland6 20 of 4 0.18Down
Larval midgut2 10 of 4 0.08Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut4 10 of 4 0.13Down
Larval fat body56 283 of 4 1.60None
Larval trachea3 10 of 4 0.12Down
Larval carcass3 10 of 4 0.11Down
S2 cells (growing)8 00 of 4 0.24Down
Whole fly34 24 of 4

Looking for FBgn0029963. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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