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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029977 through 18771 annotations produced 1 hits

hold'em (hdm):

Annotation Number : CG15329
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029977
Gbrowse : chrX:7812549-7814164 (-) // 100.0 //
Probeset : 1628036_at
Accessions : protein= NP_572422;, nucleotide= NM_132194;
FlyMine data for FBgn0029977.
VDRC has 3 RNAi stocks for FBgn0029977 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 12 of 4 4.10Up
Head1 00 of 4 1.00None
Eye1 00 of 4 0.99None
Thoracicoabdominal ganglion8 11 of 4 5.30Up
Salivary gland9 50 of 4 5.76None
Crop0 00 of 4 0.40None
Midgut1 00 of 4 1.10None
Tubule3 10 of 4 2.10None
Hindgut0 00 of 4 0.50None
Heart0 00 of 4 0.36None
Fat body1 00 of 4 0.79None
Ovary2 11 of 4 1.20None
Testis1 00 of 4 0.70None
Male accessory glands4 20 of 4 2.90None
Virgin spermatheca0 00 of 4 0.43None
Mated spermatheca1 00 of 4 0.61None
Adult carcass2 00 of 4 1.40None
Larval CNS6 02 of 4 4.00Up
Larval Salivary gland2 00 of 4 1.58None
Larval midgut2 10 of 4 1.42None
Larval tubule2 00 of 4 1.70None
Larval hindgut1 00 of 4 0.64None
Larval fat body6 20 of 4 3.90None
Larval trachea0 00 of 4 0.25None
Larval carcass1 00 of 4 0.67None
S2 cells (growing)7 11 of 4 4.69Up
Whole fly1 00 of 4

Looking for FBgn0029977. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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