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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029979 through 18771 annotations produced 1 hits



(CG10777):

Annotation Number : CG10777
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029979
Gbrowse : chrX:7818157-7825388 (-) // 99.89 //
Probeset : 1624719_at
Accessions : protein= NP_572424;, nucleotide= NM_132196;
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fr
FlyMine data for FBgn0029979.
BioGrid reports that CG10777 interacts with CG3367 CG13627 CG18398 .
VDRC has 2 RNAi stocks for FBgn0029979 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain259 244 of 4 5.40Up
Head94 134 of 4 2.00Up
Eye92 54 of 4 1.93Up
Thoracicoabdominal ganglion282 224 of 4 5.90Up
Salivary gland68 84 of 4 1.42None
Crop141 64 of 4 3.00Up
Midgut41 24 of 4 0.90None
Tubule68 34 of 4 1.40Up
Hindgut81 34 of 4 1.70Up
Heart99 74 of 4 2.08Up
Fat body157 244 of 4 3.27Up
Ovary88 14 of 4 1.80Up
Testis16 04 of 4 0.30Down
Male accessory glands148 74 of 4 3.10Up
Virgin spermatheca100 124 of 4 2.10Up
Mated spermatheca96 84 of 4 2.00Up
Adult carcass68 64 of 4 1.40None
Larval CNS458 864 of 4 9.54Up
Larval Salivary gland90 94 of 4 1.89Up
Larval midgut89 24 of 4 1.86Up
Larval tubule85 64 of 4 1.80Up
Larval hindgut149 44 of 4 3.11Up
Larval fat body60 64 of 4 1.20None
Larval trachea107 134 of 4 2.23Up
Larval carcass123 144 of 4 2.56Up
S2 cells (growing)101 54 of 4 2.11Up
Whole fly48 34 of 4

Looking for FBgn0029979. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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