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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029987 through 18771 annotations produced 1 hits



(CG15330):

Annotation Number : CG15330
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029987
Gbrowse : chrX:7850096-7850748 (+) // 100.0 //
Probeset : 1633615_at
Accessions : protein= NP_572430;, nucleotide= NM_132202;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029987.
BDGP gene expression has embryonic in situ data for CG15330: 2 pix of staining in 1 body parts.
BioGrid reports that CG15330 interacts with CG4546 .
VDRC has 2 RNAi stocks for FBgn0029987 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 03 of 4 0.30Down
Head7 ± 11 of 4 0.30Down
Eye1 ± 00 of 4 0.08Down
Thoracicoabdominal ganglion8 ± 03 of 4 0.40Down
Salivary gland19 ± 22 of 4 0.92None
Crop8 ± 01 of 4 0.40Down
Midgut8 ± 00 of 4 0.40Down
Tubule7 ± 01 of 4 0.40Down
Hindgut7 ± 03 of 4 0.40Down
Heart3 ± 00 of 4 0.17Down
Fat body11 ± 42 of 4 0.51None
Ovary5 ± 00 of 4 0.20Down
Testis178 ± 74 of 4 8.30Up
Male accessory glands11 ± 13 of 4 0.50None
Virgin spermatheca11 ± 13 of 4 0.53None
Mated spermatheca9 ± 01 of 4 0.46None
Adult carcass10 ± 21 of 4 0.50None
Larval CNS6 ± 04 of 4 0.30Down
Larval Salivary gland12 ± 12 of 4 0.57None
Larval midgut6 ± 10 of 4 0.32Down
Larval tubule7 ± 13 of 4 0.40Down
Larval hindgut5 ± 11 of 4 0.26Down
Larval fat body21 ± 54 of 4 1.00None
Larval trachea5 ± 10 of 4 0.23Down
Larval carcass10 ± 21 of 4 0.49None
S2 cells (growing)6 ± 03 of 4 0.32Down
Whole fly21 ± 34 of 4

Looking for FBgn0029987. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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