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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029989 through 18771 annotations produced 1 hits



(CG15333):

Annotation Number : CG15333
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029989
Gbrowse : chrX:7913552-7915296 (-) // 100.0 //
Probeset : 1623340_at
Accessions : protein= NP_572431;, nucleotide= NM_132203;
FlyMine data for FBgn0029989.
BDGP gene expression has embryonic in situ data for CG15333: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0029989 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.20Down
Head0 ± 00 of 4 0.10Down
Eye2 ± 10 of 4 0.19Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.10Down
Salivary gland2 ± 00 of 4 0.20Down
Crop2 ± 00 of 4 0.20Down
Midgut1 ± 00 of 4 0.10Down
Tubule4 ± 00 of 4 0.40Down
Hindgut2 ± 00 of 4 0.20Down
Heart3 ± 00 of 4 0.24Down
Fat body4 ± 30 of 4 0.37Down
Ovary1 ± 00 of 4 0.10Down
Testis216 ± 64 of 417.10Up
Male accessory glands4 ± 10 of 4 0.30Down
Virgin spermatheca6 ± 10 of 4 0.47Down
Mated spermatheca7 ± 20 of 4 0.59None
Adult carcass3 ± 00 of 4 0.30Down
Larval CNS2 ± 10 of 4 0.18Down
Larval Salivary gland3 ± 10 of 4 0.31Down
Larval midgut3 ± 20 of 4 0.28Down
Larval tubule2 ± 00 of 4 0.20Down
Larval hindgut4 ± 00 of 4 0.36Down
Larval fat body24 ± 81 of 4 2.00None
Larval trachea3 ± 20 of 4 0.29Down
Larval carcass1 ± 00 of 4 0.10Down
S2 cells (growing)1 ± 00 of 4 0.12Down
Whole fly12 ± 11 of 4

Looking for FBgn0029989. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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