FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0029990 through 18771 annotations produced 1 hits

(CG2233):

Annotation Number : CG2233
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029990
Gbrowse : chrX:7929764-7931533 (-) // 100.0 //
Probeset : 1629106_at
Accessions : protein= NP_572433;, nucleotide= NM_132205;
FlyMine data for FBgn0029990.
BDGP gene expression has embryonic in situ data for CG2233: 12 pix of staining in 2 body parts.
BioGrid reports that CG2233 interacts with CG3850 CG5099 CG9876 .
VDRC has 3 RNAi stocks for FBgn0029990 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	963 ± 55	4 of 4	0.30	Down
Head	4698 ± 153	4 of 4	1.60	Up
Eye	5685 ± 629	4 of 4	1.94	Up
Thoracicoabdominal ganglion	977 ± 63	4 of 4	0.30	Down
Salivary gland	212 ± 42	4 of 4	0.07	Down
Crop	670 ± 136	4 of 4	0.20	Down
Midgut	82 ± 13	4 of 4	0.00	Down
Tubule	747 ± 107	4 of 4	0.30	Down
Hindgut	2482 ± 59	4 of 4	0.80	Down
Heart	6754 ± 462	4 of 4	2.31	Up
Fat body	5099 ± 691	4 of 4	1.74	Up
Ovary	21 ± 2	4 of 4	0.00	Down
Testis	265 ± 14	4 of 4	0.10	Down
Male accessory glands	55 ± 4	4 of 4	0.00	Down
Virgin spermatheca	5182 ± 251	4 of 4	1.77	Up
Mated spermatheca	5277 ± 197	4 of 4	1.80	Up
Adult carcass	6223 ± 258	4 of 4	2.10	Up
Larval CNS	24 ± 4	4 of 4	0.01	Down
Larval Salivary gland	918 ± 64	4 of 4	0.31	Down
Larval midgut	62 ± 11	4 of 4	0.02	Down
Larval tubule	214 ± 51	4 of 4	0.10	Down
Larval hindgut	766 ± 138	4 of 4	0.26	Down
Larval fat body	8830 ± 952	4 of 4	3.00	Up
Larval trachea	578 ± 389	4 of 4	0.20	Down
Larval carcass	271 ± 47	4 of 4	0.09	Down
S2 cells (growing)	15 ± 1	3 of 4	0.01	Down
Whole fly	2929 ± 135	4 of 4

Looking for FBgn0029990. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720