FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0029992 through 18771 annotations produced 1 hits

Upf2 (Upf2):

Annotation Number : CG2253
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029992
Gbrowse : chrX:7965317-7969508 (-) // 100.0 //
Probeset : 1631256_at
Accessions : protein= NP_572434;, nucleotide= NM_132206;
Pathway : nonsense-mediated decay // inferred from mutant phenotype /// 0016070 // RNA metabolic process // inferred from electro
FlyMine data for FBgn0029992.
TRiP has 1 RNAi stocks for FBgn0029992 available for purchase.
VDRC has 1 RNAi stocks for FBgn0029992 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	28 ± 1	4 of 4	1.00	None
Head	19 ± 1	4 of 4	0.70	Down
Eye	11 ± 2	3 of 4	0.40	Down
Thoracicoabdominal ganglion	17 ± 2	4 of 4	0.60	Down
Salivary gland	43 ± 8	4 of 4	1.48	None
Crop	30 ± 1	4 of 4	1.00	None
Midgut	21 ± 1	3 of 4	0.70	Down
Tubule	10 ± 0	2 of 4	0.40	Down
Hindgut	20 ± 1	4 of 4	0.70	Down
Heart	9 ± 1	3 of 4	0.32	Down
Fat body	22 ± 6	4 of 4	0.77	None
Ovary	39 ± 1	4 of 4	1.30	Up
Testis	30 ± 1	4 of 4	1.10	None
Male accessory glands	39 ± 2	4 of 4	1.40	Up
Virgin spermatheca	4 ± 2	0 of 4	0.16	Down
Mated spermatheca	4 ± 1	0 of 4	0.16	Down
Adult carcass	34 ± 2	4 of 4	1.20	None
Larval CNS	33 ± 3	4 of 4	1.14	None
Larval Salivary gland	36 ± 5	4 of 4	1.26	None
Larval midgut	22 ± 1	3 of 4	0.76	Down
Larval tubule	27 ± 2	4 of 4	0.90	None
Larval hindgut	25 ± 3	4 of 4	0.86	None
Larval fat body	28 ± 2	4 of 4	1.00	None
Larval trachea	13 ± 2	4 of 4	0.46	Down
Larval carcass	38 ± 2	4 of 4	1.31	Up
S2 cells (growing)	62 ± 1	4 of 4	2.14	Up
Whole fly	29 ± 1	4 of 4

Looking for FBgn0029992. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720