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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029996 through 18771 annotations produced 1 hits

Ubc-E2H (Ubc-E2H):

Annotation Number : CG2257
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029996
Gbrowse : chrX:7982034-7988097 (-) // 100.0 //
Probeset : 1629843_s_at
Accessions : protein= NP_572438; /// NP_727233; /// NP_727234;, nucleotide= NM_132210; /// NM_167145; /// NM_167146;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0029996.
Homophila reports that CG2257 is a close match (1e-19) to human gene RAD6A;UBE2A (NP_003327), a gene associated with Mental retardation, X-linked syndromic (3).
BioGrid reports that CG2257 interacts with CG2859 CG31304 CG3217 CG4099 CG7954 CG7987 .
VDRC has 3 RNAi stocks for FBgn0029996 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain523 144 of 4 0.80Down
Head475 84 of 4 0.70Down
Eye524 264 of 4 0.82Down
Thoracicoabdominal ganglion395 134 of 4 0.60Down
Salivary gland512 434 of 4 0.81None
Crop479 134 of 4 0.80Down
Midgut493 134 of 4 0.80Down
Tubule438 224 of 4 0.70Down
Hindgut442 114 of 4 0.70Down
Heart470 244 of 4 0.74Down
Fat body764 794 of 4 1.20Up
Ovary1226 194 of 4 1.90Up
Testis70 24 of 4 0.10Down
Male accessory glands372 144 of 4 0.60Down
Virgin spermatheca491 274 of 4 0.77Down
Mated spermatheca434 184 of 4 0.68Down
Adult carcass697 214 of 4 1.10None
Larval CNS258 214 of 4 0.41Down
Larval Salivary gland230 114 of 4 0.36Down
Larval midgut528 984 of 4 0.83None
Larval tubule901 414 of 4 1.40Up
Larval hindgut381 344 of 4 0.60Down
Larval fat body784 754 of 4 1.20None
Larval trachea232 174 of 4 0.36Down
Larval carcass435 594 of 4 0.68Down
S2 cells (growing)392 64 of 4 0.62Down
Whole fly636 224 of 4

Looking for FBgn0029996. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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