Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030000 through 18771 annotations produced 1 hits



(CG2260):

Annotation Number : CG2260
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030000
Gbrowse : chrX:8013114-8015153 (-) // 99.8 //
Probeset : 1636433_at
Accessions : protein= NP_572441;, nucleotide= NM_132213;
FlyMine data for FBgn0030000.
BDGP gene expression has embryonic in situ data for CG2260: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030000 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 14 of 4 0.50Down
Head19 ± 04 of 4 0.50Down
Eye17 ± 24 of 4 0.50Down
Thoracicoabdominal ganglion24 ± 14 of 4 0.70Down
Salivary gland39 ± 40 of 4 1.09None
Crop32 ± 14 of 4 0.90None
Midgut23 ± 13 of 4 0.70Down
Tubule17 ± 11 of 4 0.50Down
Hindgut23 ± 14 of 4 0.70Down
Heart16 ± 04 of 4 0.46Down
Fat body29 ± 74 of 4 0.81None
Ovary63 ± 14 of 4 1.80Up
Testis13 ± 04 of 4 0.40Down
Male accessory glands42 ± 34 of 4 1.20None
Virgin spermatheca21 ± 14 of 4 0.58Down
Mated spermatheca26 ± 14 of 4 0.73Down
Adult carcass27 ± 24 of 4 0.80Down
Larval CNS52 ± 24 of 4 1.46Up
Larval Salivary gland37 ± 24 of 4 1.03None
Larval midgut24 ± 14 of 4 0.67Down
Larval tubule11 ± 21 of 4 0.30Down
Larval hindgut27 ± 34 of 4 0.75None
Larval fat body19 ± 22 of 4 0.60Down
Larval trachea37 ± 54 of 4 1.05None
Larval carcass31 ± 24 of 4 0.88None
S2 cells (growing)51 ± 04 of 4 1.44Up
Whole fly36 ± 14 of 4

Looking for FBgn0030000. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime