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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030004 through 18771 annotations produced 1 hits



(CG10958):

Annotation Number : CG10958
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030004
Gbrowse : chrX:8026438-8029000 (+) // 99.84 //
Probeset : 1637127_at
Accessions : protein= NP_572445;, nucleotide= NM_132217;
FlyMine data for FBgn0030004.
BDGP gene expression has embryonic in situ data for CG10958: 12 pix of staining in 4 body parts.
BioGrid reports that CG10958 interacts with CG8863 .
VDRC has 2 RNAi stocks for FBgn0030004 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 44 of 4 1.70Up
Head23 ± 24 of 4 0.60Down
Eye19 ± 34 of 4 0.52Down
Thoracicoabdominal ganglion57 ± 14 of 4 1.50Up
Salivary gland29 ± 61 of 4 0.78None
Crop18 ± 14 of 4 0.50Down
Midgut15 ± 20 of 4 0.40Down
Tubule25 ± 23 of 4 0.70Down
Hindgut19 ± 23 of 4 0.50Down
Heart11 ± 04 of 4 0.31Down
Fat body13 ± 23 of 4 0.36Down
Ovary11 ± 04 of 4 0.30Down
Testis462 ± 144 of 412.10Up
Male accessory glands15 ± 22 of 4 0.40Down
Virgin spermatheca25 ± 24 of 4 0.66Down
Mated spermatheca28 ± 14 of 4 0.73Down
Adult carcass15 ± 10 of 4 0.40Down
Larval CNS36 ± 64 of 4 0.94None
Larval Salivary gland41 ± 24 of 4 1.09None
Larval midgut11 ± 23 of 4 0.30Down
Larval tubule17 ± 32 of 4 0.50Down
Larval hindgut18 ± 04 of 4 0.49Down
Larval fat body59 ± 243 of 4 1.50None
Larval trachea32 ± 84 of 4 0.85None
Larval carcass21 ± 13 of 4 0.57Down
S2 cells (growing)21 ± 24 of 4 0.56Down
Whole fly38 ± 24 of 4

Looking for FBgn0030004. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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