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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030007 through 18771 annotations produced 1 hits



(CG2263):

Annotation Number : CG2263
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030007
Gbrowse : chrX:8037933-8039634 (-) // 100.0 //
Probeset : 1624280_at
Accessions : protein= NP_572448;, nucleotide= NM_132220;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement /
Interpro : 0000049 // tRNA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electr
FlyMine data for FBgn0030007.
BDGP gene expression has embryonic in situ data for CG2263: 21 pix of staining in 14 body parts.
VDRC has 2 RNAi stocks for FBgn0030007 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain100 44 of 4 0.60Down
Head106 24 of 4 0.60Down
Eye121 44 of 4 0.67Down
Thoracicoabdominal ganglion83 24 of 4 0.50Down
Salivary gland177 134 of 4 0.98None
Crop107 74 of 4 0.60Down
Midgut123 54 of 4 0.70Down
Tubule164 24 of 4 0.90Down
Hindgut110 04 of 4 0.60Down
Heart107 14 of 4 0.59Down
Fat body129 84 of 4 0.71Down
Ovary227 24 of 4 1.30Up
Testis47 24 of 4 0.30Down
Male accessory glands305 54 of 4 1.70Up
Virgin spermatheca94 74 of 4 0.52Down
Mated spermatheca121 44 of 4 0.67Down
Adult carcass94 34 of 4 0.50Down
Larval CNS235 134 of 4 1.29Up
Larval Salivary gland233 104 of 4 1.28Up
Larval midgut148 104 of 4 0.82Down
Larval tubule136 54 of 4 0.80Down
Larval hindgut170 24 of 4 0.94None
Larval fat body105 144 of 4 0.60Down
Larval trachea224 344 of 4 1.24None
Larval carcass195 214 of 4 1.08None
S2 cells (growing)186 34 of 4 1.03None
Whole fly181 84 of 4

Looking for FBgn0030007. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime