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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030008 through 18771 annotations produced 1 hits



(CG2129):

Annotation Number : CG2129
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030008
Gbrowse : chrX:8039969-8041888 (+) // 99.79 //
Probeset : 1632837_at
Accessions : protein= NP_572449;, nucleotide= NM_132221;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0030008.
Homophila reports that CG2129 is a close match (7e-11) to human gene GLI2;HPE9 (NP_005261), a gene associated with Holoprosencephaly-9, 610829 (3);Pituitary anomalies with holoprosencephaly-like features (3).
BioGrid reports that CG2129 interacts with CG2129 CG4328 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 04 of 4 0.50Down
Head16 04 of 4 0.40Down
Eye13 22 of 4 0.34Down
Thoracicoabdominal ganglion17 14 of 4 0.40Down
Salivary gland29 24 of 4 0.73Down
Crop19 04 of 4 0.50Down
Midgut13 04 of 4 0.30Down
Tubule9 12 of 4 0.20Down
Hindgut11 14 of 4 0.30Down
Heart12 14 of 4 0.33Down
Fat body13 34 of 4 0.35Down
Ovary122 44 of 4 3.10Up
Testis18 14 of 4 0.50Down
Male accessory glands23 24 of 4 0.60Down
Virgin spermatheca23 24 of 4 0.58Down
Mated spermatheca20 34 of 4 0.52Down
Adult carcass13 22 of 4 0.30Down
Larval CNS27 34 of 4 0.70Down
Larval Salivary gland30 14 of 4 0.78Down
Larval midgut23 24 of 4 0.60Down
Larval tubule14 24 of 4 0.40Down
Larval hindgut14 14 of 4 0.37Down
Larval fat body19 34 of 4 0.50Down
Larval trachea26 34 of 4 0.68Down
Larval carcass13 14 of 4 0.34Down
S2 cells (growing)28 14 of 4 0.71Down
Whole fly39 14 of 4

Looking for FBgn0030008. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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