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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030010 through 18771 annotations produced 1 hits



(CG10959):

Annotation Number : CG10959
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030010
Gbrowse : chrX:8042902-8044720 (+) // 100.0 //
Probeset : 1632913_at
Accessions : protein= NP_572451;, nucleotide= NM_132223;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0030010.
BDGP gene expression has embryonic in situ data for CG10959: 6 pix of staining in 1 body parts.
Homophila reports that CG10959 is a close match (7e-11) to human gene BCD1;COPEB;KLF6;ZF9 (NP_001291), a gene associated with Gastric cancer, somatic, 137215 (3);Prostate cancer, somatic, 176807 (3).
BioGrid reports that CG10959 interacts with CG13151 CG40129 CG4148 CG12470 CG15697 CG7386 .
TRiP has 1 RNAi stocks for FBgn0030010 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030010 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 ± 14 of 4 0.60Down
Head16 ± 24 of 4 0.20Down
Eye20 ± 24 of 4 0.31Down
Thoracicoabdominal ganglion30 ± 24 of 4 0.40Down
Salivary gland38 ± 34 of 4 0.56Down
Crop25 ± 14 of 4 0.40Down
Midgut19 ± 04 of 4 0.30Down
Tubule15 ± 03 of 4 0.20Down
Hindgut22 ± 24 of 4 0.30Down
Heart11 ± 04 of 4 0.17Down
Fat body28 ± 64 of 4 0.42Down
Ovary236 ± 64 of 4 3.50Up
Testis70 ± 54 of 4 1.00None
Male accessory glands24 ± 23 of 4 0.40Down
Virgin spermatheca13 ± 04 of 4 0.20Down
Mated spermatheca16 ± 23 of 4 0.24Down
Adult carcass21 ± 33 of 4 0.30Down
Larval CNS43 ± 74 of 4 0.65Down
Larval Salivary gland25 ± 14 of 4 0.38Down
Larval midgut438 ± 94 of 4 6.50Up
Larval tubule42 ± 14 of 4 0.60Down
Larval hindgut25 ± 14 of 4 0.38Down
Larval fat body29 ± 54 of 4 0.40Down
Larval trachea20 ± 34 of 4 0.31Down
Larval carcass18 ± 33 of 4 0.27Down
S2 cells (growing)23 ± 14 of 4 0.35Down
Whole fly67 ± 24 of 4

Looking for FBgn0030010. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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