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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030013 through 18771 annotations produced 1 hits



phospholipase A[[2]] (GIIIspla2):

Annotation Number : CG1583
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030013
Gbrowse : chrX:8051579-8053072 (+) // 100.0 //
Probeset : 1628080_at
Accessions : protein= NP_572454;, nucleotide= NM_132226;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0004623 // phospholipase A2 activity // inferred from sequence or structural similarity /// 0004623 // phospholipase A2
FlyMine data for FBgn0030013.
BioGrid reports that CG1583 interacts with CG16747 CG17107 .
TRiP has 2 RNAi stocks for FBgn0030013 available for purchase.
VDRC has 5 RNAi stocks for FBgn0030013 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain175 ± 84 of 4 0.70Down
Head481 ± 744 of 4 1.90None
Eye481 ± 464 of 4 1.91Up
Thoracicoabdominal ganglion165 ± 74 of 4 0.70Down
Salivary gland96 ± 124 of 4 0.38Down
Crop2631 ± 134 of 410.40Up
Midgut74 ± 44 of 4 0.30Down
Tubule70 ± 54 of 4 0.30Down
Hindgut293 ± 134 of 4 1.20None
Heart1054 ± 604 of 4 4.18Up
Fat body809 ± 824 of 4 3.21Up
Ovary374 ± 44 of 4 1.50Up
Testis20 ± 14 of 4 0.10Down
Male accessory glands89 ± 74 of 4 0.40Down
Virgin spermatheca850 ± 954 of 4 3.37Up
Mated spermatheca1026 ± 764 of 4 4.07Up
Adult carcass472 ± 124 of 4 1.90Up
Larval CNS139 ± 74 of 4 0.55Down
Larval Salivary gland177 ± 94 of 4 0.70Down
Larval midgut63 ± 54 of 4 0.25Down
Larval tubule74 ± 54 of 4 0.30Down
Larval hindgut101 ± 54 of 4 0.40Down
Larval fat body1701 ± 1414 of 4 6.70Up
Larval trachea294 ± 624 of 4 1.17None
Larval carcass118 ± 124 of 4 0.47Down
S2 cells (growing)174 ± 34 of 4 0.69Down
Whole fly252 ± 164 of 4

Looking for FBgn0030013. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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