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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030015 through 18771 annotations produced 1 hits



(CG10761):

Annotation Number : CG10761
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030015
Gbrowse : chrX:8055567-8056825 (-) // 100.0 //
Probeset : 1633158_at
Accessions : protein= NP_572456;, nucleotide= NM_132228;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0030015.
BDGP gene expression has embryonic in situ data for CG10761: 6 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0030015 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head9 ± 02 of 4 0.30Down
Eye5 ± 10 of 4 0.15Down
Thoracicoabdominal ganglion8 ± 12 of 4 0.20Down
Salivary gland17 ± 31 of 4 0.47Down
Crop9 ± 12 of 4 0.30Down
Midgut9 ± 30 of 4 0.20Down
Tubule5 ± 00 of 4 0.20Down
Hindgut9 ± 20 of 4 0.30Down
Heart6 ± 21 of 4 0.18Down
Fat body13 ± 31 of 4 0.36Down
Ovary3 ± 00 of 4 0.10Down
Testis569 ± 194 of 415.60Up
Male accessory glands15 ± 10 of 4 0.40Down
Virgin spermatheca6 ± 00 of 4 0.18Down
Mated spermatheca8 ± 10 of 4 0.24Down
Adult carcass12 ± 20 of 4 0.30Down
Larval CNS5 ± 12 of 4 0.14Down
Larval Salivary gland10 ± 12 of 4 0.27Down
Larval midgut9 ± 00 of 4 0.26Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut7 ± 10 of 4 0.20Down
Larval fat body51 ± 243 of 4 1.40None
Larval trachea4 ± 11 of 4 0.13Down
Larval carcass6 ± 22 of 4 0.18Down
S2 cells (growing)4 ± 00 of 4 0.11Down
Whole fly36 ± 24 of 4

Looking for FBgn0030015. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime