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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030016 through 18771 annotations produced 1 hits



Odorant receptor 7a (Or7a):

Annotation Number : CG10759
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030016
Gbrowse : chrX:8058298-8059741 (-) // 100.0 //
Probeset : 1629830_at
Accessions : protein= NP_511081;, nucleotide= NM_078526;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0030016.
VDRC has 1 RNAi stocks for FBgn0030016 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 1.20None
Head10 13 of 4 2.30Up
Eye5 20 of 4 1.11None
Thoracicoabdominal ganglion6 10 of 4 1.40None
Salivary gland4 00 of 4 0.95None
Crop3 10 of 4 0.70None
Midgut6 00 of 4 1.40None
Tubule4 10 of 4 0.90None
Hindgut3 10 of 4 0.80None
Heart3 00 of 4 0.85None
Fat body4 10 of 4 1.03None
Ovary2 00 of 4 0.60None
Testis2 10 of 4 0.60None
Male accessory glands4 20 of 4 1.00None
Virgin spermatheca6 01 of 4 1.30None
Mated spermatheca4 01 of 4 1.02None
Adult carcass6 31 of 4 1.30None
Larval CNS4 11 of 4 0.95None
Larval Salivary gland7 11 of 4 1.66None
Larval midgut4 01 of 4 0.89None
Larval tubule4 10 of 4 1.00None
Larval hindgut2 10 of 4 0.59None
Larval fat body2 00 of 4 0.60None
Larval trachea4 11 of 4 1.01None
Larval carcass4 00 of 4 0.89None
S2 cells (growing)3 12 of 4 0.84None
Whole fly4 10 of 4

Looking for FBgn0030016. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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