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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030017 through 18771 annotations produced 1 hits



(CG2278):

Annotation Number : CG2278
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030017
Gbrowse : chrX:8061986-8063955 (-) // 100.0 //
Probeset : 1634365_at
Accessions : protein= NP_572457;, nucleotide= NM_132229;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030017.
BioGrid reports that CG2278 interacts with CG5744 CG6276 CG7641 CG3342 CG5537 .
VDRC has 3 RNAi stocks for FBgn0030017 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 04 of 4 1.20None
Head11 ± 23 of 4 0.90None
Eye6 ± 11 of 4 0.49None
Thoracicoabdominal ganglion15 ± 32 of 4 1.10None
Salivary gland24 ± 60 of 4 1.84None
Crop13 ± 31 of 4 1.00None
Midgut14 ± 10 of 4 1.10None
Tubule7 ± 10 of 4 0.50Down
Hindgut8 ± 11 of 4 0.60None
Heart5 ± 22 of 4 0.41None
Fat body12 ± 11 of 4 0.91None
Ovary7 ± 10 of 4 0.50None
Testis10 ± 10 of 4 0.80None
Male accessory glands10 ± 40 of 4 0.80None
Virgin spermatheca7 ± 10 of 4 0.59None
Mated spermatheca6 ± 00 of 4 0.50None
Adult carcass12 ± 20 of 4 0.90None
Larval CNS12 ± 14 of 4 0.95None
Larval Salivary gland10 ± 21 of 4 0.78None
Larval midgut9 ± 40 of 4 0.68None
Larval tubule10 ± 10 of 4 0.80None
Larval hindgut6 ± 10 of 4 0.48None
Larval fat body16 ± 20 of 4 1.20None
Larval trachea7 ± 21 of 4 0.55None
Larval carcass10 ± 00 of 4 0.77None
S2 cells (growing)15 ± 02 of 4 1.12None
Whole fly13 ± 22 of 4

Looking for FBgn0030017. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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