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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030018 through 18771 annotations produced 1 hits



slipper (slpr):

Annotation Number : CG2272
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030018
Gbrowse : chrX:8064711-8071187 (-) // 99.65 //
Probeset : 1637966_at
Accessions : protein= NP_572458;, nucleotide= NM_132230;
Pathway : elongation of leading edge cells // inferred from mutant phenotype /// 0046330 // positive regulation of JNK cascade //
Interpro : thorax closure // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from sequence o
FlyMine data for FBgn0030018.
Homophila reports that CG2272 is a close match (7e-11) to human gene GRK1;RHOK;RK (NP_002920), a gene associated with Oguchi disease-2, 258100 (3).
BioGrid reports that CG2272 interacts with CG2275 CG1857 CG2248 CG7850 .
TRiP has 3 RNAi stocks for FBgn0030018 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030018 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain104 ± 44 of 4 0.60Down
Head85 ± 94 of 4 0.50Down
Eye102 ± 64 of 4 0.58Down
Thoracicoabdominal ganglion126 ± 04 of 4 0.70Down
Salivary gland191 ± 114 of 4 1.09None
Crop203 ± 54 of 4 1.20Up
Midgut156 ± 34 of 4 0.90Down
Tubule246 ± 44 of 4 1.40Up
Hindgut147 ± 44 of 4 0.80Down
Heart117 ± 64 of 4 0.67Down
Fat body200 ± 214 of 4 1.14None
Ovary498 ± 64 of 4 2.80Up
Testis65 ± 14 of 4 0.40Down
Male accessory glands214 ± 114 of 4 1.20Up
Virgin spermatheca275 ± 144 of 4 1.57Up
Mated spermatheca290 ± 164 of 4 1.66Up
Adult carcass130 ± 54 of 4 0.70Down
Larval CNS205 ± 214 of 4 1.17None
Larval Salivary gland165 ± 04 of 4 0.94Down
Larval midgut255 ± 204 of 4 1.45Up
Larval tubule227 ± 164 of 4 1.30Up
Larval hindgut190 ± 64 of 4 1.08None
Larval fat body198 ± 104 of 4 1.10None
Larval trachea182 ± 194 of 4 1.04None
Larval carcass190 ± 114 of 4 1.09None
S2 cells (growing)157 ± 44 of 4 0.90Down
Whole fly175 ± 24 of 4

Looking for FBgn0030018. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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