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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030025 through 18771 annotations produced 1 hits



(CG2147):

Annotation Number : CG2147
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030025
Gbrowse : chrX:8134716-8135519 (+) // 100.0 //
Probeset : 1641703_at
Accessions : protein= NP_572465;, nucleotide= NM_132237;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030025.
BioGrid reports that CG2147 interacts with CG9949 .
VDRC has 1 RNAi stocks for FBgn0030025 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 34 of 4 0.40Down
Head56 54 of 4 0.40Down
Eye46 14 of 4 0.33Down
Thoracicoabdominal ganglion40 24 of 4 0.30Down
Salivary gland106 54 of 4 0.76Down
Crop77 34 of 4 0.50Down
Midgut83 24 of 4 0.60Down
Tubule20 13 of 4 0.10Down
Hindgut60 24 of 4 0.40Down
Heart77 44 of 4 0.55Down
Fat body78 74 of 4 0.56Down
Ovary176 44 of 4 1.30Up
Testis292 94 of 4 2.10Up
Male accessory glands297 44 of 4 2.10Up
Virgin spermatheca35 14 of 4 0.25Down
Mated spermatheca41 24 of 4 0.30Down
Adult carcass57 54 of 4 0.40Down
Larval CNS158 124 of 4 1.13None
Larval Salivary gland137 44 of 4 0.98None
Larval midgut89 54 of 4 0.64Down
Larval tubule102 34 of 4 0.70Down
Larval hindgut69 34 of 4 0.50Down
Larval fat body103 64 of 4 0.70Down
Larval trachea150 144 of 4 1.08None
Larval carcass116 84 of 4 0.83None
S2 cells (growing)189 64 of 4 1.35Up
Whole fly140 44 of 4

Looking for FBgn0030025. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime