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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030027 through 18771 annotations produced 1 hits



(CG1632):

Annotation Number : CG1632
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030027
Gbrowse : chrX:8147263-8166502 (+) // 100.0 //
Probeset : 1640952_at
Accessions : protein= NP_572467;, nucleotide= NM_132239;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0030027.
Homophila reports that CG1632 is a close match (7e-11) to human gene BMND1;EVR4;LR3;LRP5;LRP7;OPPG;OPTA1;VBCH2 (NP_002326), a gene associated with Exudative vitreoretinopathy 4, 601813 (3);Hyperostosis, endosteal, 144750 (3);Osteopetrosis, AD type I, 607634 (3);Osteoporosis-pseudoglioma syndrome, 259770 (3);Osteosclerosis, 144750 (3);van Buchem disease, type 2, 607636 (3);[Bone mineral density variability 1], 601884 (3);{Osteoporosis}, 166710 (3).
VDRC has 2 RNAi stocks for FBgn0030027 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 12 of 4 0.20Down
Head69 54 of 4 2.70Up
Eye222 94 of 4 8.45Up
Thoracicoabdominal ganglion9 01 of 4 0.30Down
Salivary gland22 42 of 4 0.87None
Crop15 23 of 4 0.60Down
Midgut13 11 of 4 0.50Down
Tubule14 13 of 4 0.60Down
Hindgut56 44 of 4 2.10Up
Heart8 12 of 4 0.34Down
Fat body17 61 of 4 0.68None
Ovary12 14 of 4 0.50Down
Testis21 14 of 4 0.80None
Male accessory glands10 41 of 4 0.40Down
Virgin spermatheca14 12 of 4 0.55Down
Mated spermatheca14 12 of 4 0.54Down
Adult carcass18 21 of 4 0.70None
Larval CNS17 64 of 4 0.68None
Larval Salivary gland33 24 of 4 1.27None
Larval midgut21 04 of 4 0.82None
Larval tubule19 14 of 4 0.70None
Larval hindgut125 44 of 4 4.77Up
Larval fat body24 13 of 4 0.90None
Larval trachea162 204 of 4 6.17Up
Larval carcass53 44 of 4 2.02Up
S2 cells (growing)7 12 of 4 0.28Down
Whole fly26 34 of 4

Looking for FBgn0030027. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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