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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030028 through 18771 annotations produced 1 hits



Companion of reaper (Corp):

Annotation Number : CG10965
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030028
Gbrowse : chrX:8164062-8165437 (-) // 100.0 //
Probeset : 1641082_at
Accessions : protein= NP_572468;, nucleotide= NM_132240;
Pathway : signal transduction resulting in induction of apoptosis // non-traceable author statement"
FlyMine data for FBgn0030028.
BDGP gene expression has embryonic in situ data for CG10965: 19 pix of staining in 4 body parts.
BioGrid reports that CG10965 interacts with CG8003 .
VDRC has 2 RNAi stocks for FBgn0030028 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 14 of 4 0.10Down
Head11 ± 12 of 4 0.10Down
Eye7 ± 03 of 4 0.07Down
Thoracicoabdominal ganglion17 ± 14 of 4 0.20Down
Salivary gland8 ± 30 of 4 0.08Down
Crop8 ± 00 of 4 0.10Down
Midgut10 ± 10 of 4 0.10Down
Tubule5 ± 20 of 4 0.00Down
Hindgut13 ± 23 of 4 0.10Down
Heart15 ± 14 of 4 0.15Down
Fat body10 ± 10 of 4 0.10Down
Ovary271 ± 34 of 4 2.60Up
Testis3 ± 10 of 4 0.00Down
Male accessory glands9 ± 30 of 4 0.10Down
Virgin spermatheca10 ± 01 of 4 0.10Down
Mated spermatheca12 ± 10 of 4 0.12Down
Adult carcass20 ± 23 of 4 0.20Down
Larval CNS63 ± 114 of 4 0.60Down
Larval Salivary gland6 ± 20 of 4 0.06Down
Larval midgut5 ± 10 of 4 0.05Down
Larval tubule8 ± 20 of 4 0.10Down
Larval hindgut9 ± 11 of 4 0.09Down
Larval fat body9 ± 10 of 4 0.10Down
Larval trachea23 ± 34 of 4 0.22Down
Larval carcass54 ± 64 of 4 0.51Down
S2 cells (growing)6 ± 11 of 4 0.06Down
Whole fly106 ± 84 of 4

Looking for FBgn0030028. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime