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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030030 through 18771 annotations produced 1 hits



(CG1636):

Annotation Number : CG1636
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030030
Gbrowse : chrX:8167482-8169450 (+) // 100.0 //
Probeset : 1624943_at
Accessions : protein= NP_572470;, nucleotide= NM_132242;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030030.
BioGrid reports that CG1636 interacts with CG9101 .
TRiP has 1 RNAi stocks for FBgn0030030 available for purchase.
VDRC has 1 RNAi stocks for FBgn0030030 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain165 ± 84 of 4 2.10Up
Head100 ± 134 of 4 1.30None
Eye61 ± 24 of 4 0.79Down
Thoracicoabdominal ganglion149 ± 144 of 4 1.90Up
Salivary gland84 ± 34 of 4 1.08None
Crop28 ± 34 of 4 0.40Down
Midgut21 ± 14 of 4 0.30Down
Tubule9 ± 12 of 4 0.10Down
Hindgut54 ± 14 of 4 0.70Down
Heart22 ± 14 of 4 0.29Down
Fat body49 ± 134 of 4 0.63Down
Ovary99 ± 74 of 4 1.30None
Testis29 ± 24 of 4 0.40Down
Male accessory glands65 ± 64 of 4 0.80None
Virgin spermatheca10 ± 00 of 4 0.13Down
Mated spermatheca15 ± 14 of 4 0.19Down
Adult carcass124 ± 54 of 4 1.60Up
Larval CNS51 ± 114 of 4 0.66Down
Larval Salivary gland55 ± 74 of 4 0.71None
Larval midgut15 ± 14 of 4 0.20Down
Larval tubule15 ± 24 of 4 0.20Down
Larval hindgut38 ± 14 of 4 0.49Down
Larval fat body54 ± 44 of 4 0.70Down
Larval trachea22 ± 44 of 4 0.29Down
Larval carcass26 ± 24 of 4 0.34Down
S2 cells (growing)49 ± 34 of 4 0.63Down
Whole fly78 ± 54 of 4

Looking for FBgn0030030. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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