FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0030034 through 18771 annotations produced 1 hits

/// (CG10555 /// DsimCG10555):

Annotation Number : CG10555
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030034
Gbrowse : chrX:8293427-8297978 (+) // 100.0 //
Probeset : 1638135_at
Accessions : protein= NP_572474;, nucleotide= NM_132246;
FlyMine data for FBgn0030034.
VDRC has 3 RNAi stocks for FBgn0030034 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	112 ± 2	4 of 4	1.00	None
Head	51 ± 5	4 of 4	0.50	Down
Eye	68 ± 5	4 of 4	0.63	Down
Thoracicoabdominal ganglion	93 ± 3	4 of 4	0.80	None
Salivary gland	101 ± 4	4 of 4	0.92	None
Crop	81 ± 3	4 of 4	0.70	None
Midgut	59 ± 4	4 of 4	0.50	Down
Tubule	68 ± 3	4 of 4	0.60	Down
Hindgut	79 ± 4	4 of 4	0.70	None
Heart	60 ± 3	4 of 4	0.55	Down
Fat body	71 ± 12	4 of 4	0.65	Down
Ovary	308 ± 3	4 of 4	2.80	Up
Testis	13 ± 0	4 of 4	0.10	Down
Male accessory glands	76 ± 5	4 of 4	0.70	None
Virgin spermatheca	54 ± 3	4 of 4	0.49	Down
Mated spermatheca	52 ± 3	4 of 4	0.48	Down
Adult carcass	46 ± 3	4 of 4	0.40	Down
Larval CNS	407 ± 63	4 of 4	3.71	Up
Larval Salivary gland	98 ± 1	4 of 4	0.90	None
Larval midgut	40 ± 2	4 of 4	0.37	Down
Larval tubule	95 ± 4	4 of 4	0.90	None
Larval hindgut	94 ± 5	4 of 4	0.86	None
Larval fat body	65 ± 4	4 of 4	0.60	Down
Larval trachea	179 ± 27	4 of 4	1.63	Up
Larval carcass	113 ± 6	4 of 4	1.03	None
S2 cells (growing)	160 ± 8	4 of 4	1.46	Up
Whole fly	110 ± 12	4 of 4

Looking for FBgn0030034. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720