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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030037 through 18771 annotations produced 1 hits



/// (CG12125 /// DsimGD24570):

Annotation Number : CG12125
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030037
Gbrowse : chrX:8327955-8330833 (-) // 99.78 //
Probeset : 1630795_at
Accessions : protein= NP_001162702; /// NP_572476;, nucleotide= NM_001169231; /// NM_132248;
FlyMine data for FBgn0030037.
BioGrid reports that CG12125 interacts with CG2224 .
VDRC has 2 RNAi stocks for FBgn0030037 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain294 ± 124 of 4 1.90Up
Head99 ± 24 of 4 0.60Down
Eye46 ± 34 of 4 0.29Down
Thoracicoabdominal ganglion232 ± 94 of 4 1.50Up
Salivary gland54 ± 34 of 4 0.35Down
Crop99 ± 54 of 4 0.60Down
Midgut45 ± 44 of 4 0.30Down
Tubule49 ± 24 of 4 0.30Down
Hindgut50 ± 24 of 4 0.30Down
Heart96 ± 74 of 4 0.61Down
Fat body155 ± 144 of 4 0.99None
Ovary380 ± 34 of 4 2.40Up
Testis32 ± 44 of 4 0.20Down
Male accessory glands29 ± 14 of 4 0.20Down
Virgin spermatheca64 ± 14 of 4 0.41Down
Mated spermatheca67 ± 24 of 4 0.43Down
Adult carcass77 ± 64 of 4 0.50Down
Larval CNS175 ± 184 of 4 1.11None
Larval Salivary gland34 ± 14 of 4 0.22Down
Larval midgut33 ± 14 of 4 0.21Down
Larval tubule36 ± 34 of 4 0.20Down
Larval hindgut44 ± 34 of 4 0.28Down
Larval fat body44 ± 34 of 4 0.30Down
Larval trachea48 ± 64 of 4 0.31Down
Larval carcass49 ± 24 of 4 0.31Down
S2 cells (growing)59 ± 14 of 4 0.38Down
Whole fly157 ± 54 of 4

Looking for FBgn0030037. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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