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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030039 through 18771 annotations produced 1 hits



/// (CG12123 /// DsimCG12123):

Annotation Number : CG12123
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030039
Gbrowse : chrX:8335279-8336374 (-) // 99.52 //
Probeset : 1638522_at
Accessions : protein= NP_572478;, nucleotide= NM_132250;
FlyMine data for FBgn0030039.
VDRC has 4 RNAi stocks for FBgn0030039 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain208 54 of 4 1.50Up
Head82 04 of 4 0.60Down
Eye97 24 of 4 0.70Down
Thoracicoabdominal ganglion170 44 of 4 1.20Up
Salivary gland62 14 of 4 0.45Down
Crop91 34 of 4 0.70Down
Midgut67 54 of 4 0.50Down
Tubule117 94 of 4 0.80Down
Hindgut77 14 of 4 0.60Down
Heart92 44 of 4 0.67Down
Fat body82 64 of 4 0.59Down
Ovary249 34 of 4 1.80Up
Testis291 54 of 4 2.10Up
Male accessory glands51 54 of 4 0.40Down
Virgin spermatheca55 34 of 4 0.40Down
Mated spermatheca64 24 of 4 0.47Down
Adult carcass59 14 of 4 0.40Down
Larval CNS94 64 of 4 0.69Down
Larval Salivary gland72 54 of 4 0.53Down
Larval midgut60 34 of 4 0.44Down
Larval tubule83 34 of 4 0.60Down
Larval hindgut70 64 of 4 0.51Down
Larval fat body71 54 of 4 0.50Down
Larval trachea117 74 of 4 0.85Down
Larval carcass112 44 of 4 0.82Down
S2 cells (growing)113 34 of 4 0.82Down
Whole fly138 44 of 4

Looking for FBgn0030039. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime