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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030041 through 18771 annotations produced 1 hits



/// (CG12116 /// DsecCG12116):

Annotation Number : CG12116
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030041
Gbrowse : chrX:8361475-8363040 (-) // 100.0 //
Probeset : 1635987_at
Accessions : protein= NP_572481;, nucleotide= NM_132253;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004757 // sepiapterin reductase activity // in
FlyMine data for FBgn0030041.
BioGrid reports that CG12116 interacts with CG31150 CG4345 CG7029 CG8719 CG8721 CG9773 CG5469 CG6792 CG8539 CG9703 .
VDRC has 1 RNAi stocks for FBgn0030041 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 ± 74 of 4 0.00Down
Head1732 ± 1114 of 4 1.70Up
Eye914 ± 1074 of 4 0.90None
Thoracicoabdominal ganglion48 ± 114 of 4 0.00Down
Salivary gland15 ± 20 of 4 0.02Down
Crop59 ± 24 of 4 0.10Down
Midgut5 ± 00 of 4 0.00Down
Tubule75 ± 403 of 4 0.10Down
Hindgut220 ± 104 of 4 0.20Down
Heart3279 ± 1464 of 4 3.23Up
Fat body4073 ± 4694 of 4 4.01Up
Ovary7 ± 13 of 4 0.00Down
Testis6 ± 11 of 4 0.00Down
Male accessory glands5 ± 20 of 4 0.00Down
Virgin spermatheca4094 ± 1594 of 4 4.03Up
Mated spermatheca4169 ± 1504 of 4 4.10Up
Adult carcass3077 ± 2904 of 4 3.00Up
Larval CNS2 ± 10 of 4 0.00Down
Larval Salivary gland108 ± 184 of 4 0.11Down
Larval midgut7 ± 31 of 4 0.01Down
Larval tubule17 ± 53 of 4 0.00Down
Larval hindgut161 ± 604 of 4 0.16Down
Larval fat body5807 ± 6434 of 4 5.70Up
Larval trachea63 ± 444 of 4 0.06Down
Larval carcass39 ± 74 of 4 0.04Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly1016 ± 1734 of 4

Looking for FBgn0030041. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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