Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
About & FAQ
Top 50
Original data
Interesting meta-analysis

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030051 through 18771 annotations produced 1 hits

CG2056 (spirit):

Annotation Number : CG2056
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030051
Gbrowse : chrX:8465131-8467605 (-) // 100.0 //
Probeset : 1631650_a_at
Accessions : protein= NP_001162707; /// NP_572492; /// NP_727276;, nucleotide= NM_001169236; /// NM_132264; /// NM_167161;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0030051.
BDGP gene expression has embryonic in situ data for CG2056: 4 pix of staining in 1 body parts.
Homophila reports that CG2056 is a close match (2e-11) to human gene F7 (NP_062562), a gene associated with Factor VII deficiency (3);{Myocardial infarction, decreased susceptibility to} (3).
TRiP has 1 RNAi stocks for FBgn0030051 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030051 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head51 54 of 4 2.90Up
Eye64 34 of 4 3.65Up
Thoracicoabdominal ganglion3 10 of 4 0.20Down
Salivary gland3 00 of 4 0.19Down
Crop95 44 of 4 5.40Up
Midgut20 30 of 4 1.20None
Tubule3 00 of 4 0.20Down
Hindgut88 14 of 4 5.00Up
Heart15 10 of 4 0.88None
Fat body48 251 of 4 2.73None
Ovary4 10 of 4 0.20Down
Testis6 10 of 4 0.40Down
Male accessory glands3 00 of 4 0.20Down
Virgin spermatheca39 94 of 4 2.26None
Mated spermatheca42 54 of 4 2.41Up
Adult carcass48 54 of 4 2.70Up
Larval CNS2 10 of 4 0.13Down
Larval Salivary gland5 30 of 4 0.33Down
Larval midgut5 10 of 4 0.31Down
Larval tubule4 10 of 4 0.30Down
Larval hindgut34 31 of 4 1.94Up
Larval fat body661 1314 of 437.60Up
Larval trachea26 34 of 4 1.53Up
Larval carcass105 494 of 4 6.02None
S2 cells (growing)3 10 of 4 0.22Down
Whole fly17 11 of 4

Looking for FBgn0030051. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime