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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030052 through 18771 annotations produced 1 hits



/// CG12065 (CG12065 /// DsimGD16908):

Annotation Number : CG12065
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030052
Gbrowse : chrX:8468368-8482200 (+) // 100.0 //
Probeset : 1632774_s_at
Accessions : protein= NP_001162708; /// NP_001162709; /// NP_572493; /// NP_727278; /// NP_996384; /// NP_996385;, nucleotide= NM_001169237; /// NM_001169238; /// NM_132265; /// NM_167162; /// NM_206661; /// NM_206662;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0030052.
BioGrid reports that CG12065 interacts with CG18042 CG5703 .
TRiP has 1 RNAi stocks for FBgn0030052 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030052 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 02 of 4 1.50None
Head13 10 of 4 1.10None
Eye4 10 of 4 0.41None
Thoracicoabdominal ganglion26 34 of 4 2.30Up
Salivary gland19 40 of 4 1.67None
Crop14 10 of 4 1.30None
Midgut18 20 of 4 1.60None
Tubule13 10 of 4 1.20None
Hindgut21 20 of 4 1.80Up
Heart10 20 of 4 0.93None
Fat body16 10 of 4 1.44None
Ovary8 10 of 4 0.70None
Testis7 10 of 4 0.70None
Male accessory glands6 10 of 4 0.50None
Virgin spermatheca9 00 of 4 0.83None
Mated spermatheca7 10 of 4 0.66None
Adult carcass33 101 of 4 2.80None
Larval CNS15 40 of 4 1.36None
Larval Salivary gland11 00 of 4 0.98None
Larval midgut43 44 of 4 3.73Up
Larval tubule11 20 of 4 1.00None
Larval hindgut45 14 of 4 3.90Up
Larval fat body1 00 of 4 0.20Down
Larval trachea3 10 of 4 0.30Down
Larval carcass20 20 of 4 1.73None
S2 cells (growing)208 84 of 417.85Up
Whole fly11 20 of 4

Looking for FBgn0030052. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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