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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030054 through 18771 annotations produced 1 hits



Caf1-180 (Caf1-180):

Annotation Number : CG12109
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030054
Gbrowse : chrX:8496393-8500259 (-) // 100.0 //
Probeset : 1635702_a_at
Accessions : protein= NP_572495;, nucleotide= NM_132267;
Pathway : 0005678 // chromatin assembly complex // inferred from sequence or structural similarity /// 0005678 // chromatin assemb
FlyMine data for FBgn0030054.
BioGrid reports that CG12109 interacts with CG13022 .
TRiP has 2 RNAi stocks for FBgn0030054 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030054 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.00Down
Head16 10 of 4 0.10Down
Eye7 10 of 4 0.05Down
Thoracicoabdominal ganglion7 00 of 4 0.10Down
Salivary gland18 70 of 4 0.13Down
Crop18 00 of 4 0.10Down
Midgut9 30 of 4 0.10Down
Tubule8 10 of 4 0.10Down
Hindgut20 10 of 4 0.10Down
Heart6 00 of 4 0.04Down
Fat body20 50 of 4 0.14Down
Ovary355 124 of 4 2.40Up
Testis7 00 of 4 0.00Down
Male accessory glands39 30 of 4 0.30Down
Virgin spermatheca11 20 of 4 0.07Down
Mated spermatheca10 20 of 4 0.07Down
Adult carcass33 30 of 4 0.20Down
Larval CNS95 114 of 4 0.64None
Larval Salivary gland125 80 of 4 0.84None
Larval midgut30 30 of 4 0.20Down
Larval tubule27 20 of 4 0.20Down
Larval hindgut46 20 of 4 0.31Down
Larval fat body22 60 of 4 0.20Down
Larval trachea76 114 of 4 0.51None
Larval carcass63 50 of 4 0.42Down
S2 cells (growing)180 104 of 4 1.20None
Whole fly149 234 of 4

Looking for FBgn0030054. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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