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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030055 through 18771 annotations produced 1 hits



(CG12772):

Annotation Number : CG12772
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030055
Gbrowse : chrX:8571095-8574751 (+) // 100.0 //
Probeset : 1629793_at
Accessions : protein= NP_572496;, nucleotide= NM_132268;
FlyMine data for FBgn0030055.
Homophila reports that CG12772 is a close match (4e-28) to human gene AP162;KIAA0356;OPTB6;PLEKHM1 (NP_055613), a gene associated with Osteopetrosis, autosomal recessive 6, 611497 (3).
VDRC has 3 RNAi stocks for FBgn0030055 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain103 ± 84 of 4 1.90Up
Head57 ± 84 of 4 1.10None
Eye43 ± 24 of 4 0.81None
Thoracicoabdominal ganglion68 ± 34 of 4 1.30None
Salivary gland84 ± 114 of 4 1.56None
Crop62 ± 24 of 4 1.10None
Midgut48 ± 03 of 4 0.90None
Tubule32 ± 10 of 4 0.60Down
Hindgut51 ± 44 of 4 0.90None
Heart56 ± 34 of 4 1.04None
Fat body65 ± 153 of 4 1.20None
Ovary66 ± 34 of 4 1.20None
Testis18 ± 21 of 4 0.30Down
Male accessory glands38 ± 53 of 4 0.70None
Virgin spermatheca22 ± 40 of 4 0.41Down
Mated spermatheca24 ± 30 of 4 0.46Down
Adult carcass69 ± 71 of 4 1.30None
Larval CNS59 ± 74 of 4 1.11None
Larval Salivary gland61 ± 44 of 4 1.14None
Larval midgut58 ± 14 of 4 1.08None
Larval tubule50 ± 54 of 4 0.90None
Larval hindgut50 ± 44 of 4 0.93None
Larval fat body54 ± 44 of 4 1.00None
Larval trachea56 ± 54 of 4 1.04None
Larval carcass60 ± 34 of 4 1.13None
S2 cells (growing)90 ± 34 of 4 1.67Up
Whole fly54 ± 54 of 4

Looking for FBgn0030055. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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