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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030057 through 18771 annotations produced 1 hits



Palmitoyl-protein thioesterase 1 (Ppt1):

Annotation Number : CG12108
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030057
Gbrowse : chrX:8582659-8584045 (-) // 100.0 //
Probeset : 1637608_at
Accessions : protein= NP_727284;, nucleotide= NM_167166;
Pathway : 0005764 // lysosome // inferred from sequence or structural similarity /// 0005764 // lysosome // inferred from electron
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008474 // palmitoyl-(protein) hydrolase activity /
FlyMine data for FBgn0030057.
Homophila reports that CG12108 is a close match (5e-89) to human gene CLN1;PPT1 (NP_000301), a gene associated with Ceroid lipofuscinosis, neuronal, variant juvenile type, with granular osmiophilic deposits (3);Ceroid lipofuscinosis, neuronal-1, infantile, 256730 (3).
BioGrid reports that CG12108 interacts with CG5846 .
TRiP has 1 RNAi stocks for FBgn0030057 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 34 of 4 0.80Down
Head60 04 of 4 0.80Down
Eye58 34 of 4 0.80Down
Thoracicoabdominal ganglion56 14 of 4 0.80Down
Salivary gland54 43 of 4 0.76Down
Crop59 44 of 4 0.80None
Midgut64 14 of 4 0.90Down
Tubule58 54 of 4 0.80Down
Hindgut61 44 of 4 0.80None
Heart200 114 of 4 2.77Up
Fat body179 244 of 4 2.48Up
Ovary97 34 of 4 1.40Up
Testis49 14 of 4 0.70Down
Male accessory glands208 54 of 4 2.90Up
Virgin spermatheca125 74 of 4 1.73Up
Mated spermatheca115 34 of 4 1.59Up
Adult carcass113 84 of 4 1.60Up
Larval CNS95 44 of 4 1.31Up
Larval Salivary gland58 34 of 4 0.81Down
Larval midgut75 44 of 4 1.04None
Larval tubule123 44 of 4 1.70Up
Larval hindgut119 54 of 4 1.65Up
Larval fat body148 74 of 4 2.10Up
Larval trachea147 94 of 4 2.03Up
Larval carcass76 54 of 4 1.06None
S2 cells (growing)466 124 of 4 6.44Up
Whole fly72 24 of 4

Looking for FBgn0030057. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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