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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030058 through 18771 annotations produced 1 hits



(CG11294):

Annotation Number : CG11294
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030058
Gbrowse : chrX:8586200-8587656 (-) // 100.0 //
Probeset : 1626890_at
Accessions : protein= NP_572500;, nucleotide= NM_132272;
Pathway : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0030058.
Homophila reports that CG11294 is a close match (9e-13) to human gene PROP1 (NP_006252), a gene associated with Pituitary hormone deficiency, combined (3).
TRiP has 1 RNAi stocks for FBgn0030058 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030058 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 34 of 4 4.70Up
Head7 00 of 4 1.00None
Eye5 00 of 4 0.72None
Thoracicoabdominal ganglion1 00 of 4 0.20Down
Salivary gland3 00 of 4 0.47None
Crop3 10 of 4 0.50None
Midgut4 00 of 4 0.60None
Tubule2 00 of 4 0.30Down
Hindgut2 00 of 4 0.30None
Heart1 00 of 4 0.17Down
Fat body2 00 of 4 0.28None
Ovary2 00 of 4 0.30Down
Testis96 14 of 413.30Up
Male accessory glands1 00 of 4 0.20Down
Virgin spermatheca1 00 of 4 0.23Down
Mated spermatheca1 00 of 4 0.20Down
Adult carcass5 30 of 4 0.80None
Larval CNS32 34 of 4 4.43Up
Larval Salivary gland3 00 of 4 0.47None
Larval midgut2 00 of 4 0.30None
Larval tubule2 00 of 4 0.30Down
Larval hindgut1 00 of 4 0.18Down
Larval fat body17 91 of 4 2.30None
Larval trachea2 20 of 4 0.36None
Larval carcass2 00 of 4 0.33None
S2 cells (growing)0 00 of 4 0.12Down
Whole fly7 10 of 4

Looking for FBgn0030058. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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