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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030063 through 18771 annotations produced 1 hits



(CG1789):

Annotation Number : CG1789
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030063
Gbrowse : chrX:8614589-8615530 (+) // 99.51 //
Probeset : 1633091_at
Accessions : protein= NP_572504;, nucleotide= NM_132276;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotatio
FlyMine data for FBgn0030063.
BDGP gene expression has embryonic in situ data for CG1789: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0030063 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain162 ± 24 of 4 1.20Up
Head108 ± 74 of 4 0.80Down
Eye82 ± 44 of 4 0.60Down
Thoracicoabdominal ganglion142 ± 74 of 4 1.00None
Salivary gland117 ± 84 of 4 0.85None
Crop122 ± 44 of 4 0.90None
Midgut85 ± 54 of 4 0.60Down
Tubule59 ± 34 of 4 0.40Down
Hindgut71 ± 14 of 4 0.50Down
Heart76 ± 34 of 4 0.56Down
Fat body67 ± 74 of 4 0.49Down
Ovary233 ± 54 of 4 1.70Up
Testis61 ± 04 of 4 0.40Down
Male accessory glands130 ± 104 of 4 0.90None
Virgin spermatheca69 ± 44 of 4 0.51Down
Mated spermatheca78 ± 44 of 4 0.57Down
Adult carcass91 ± 44 of 4 0.70Down
Larval CNS148 ± 94 of 4 1.08None
Larval Salivary gland130 ± 84 of 4 0.95None
Larval midgut55 ± 12 of 4 0.41Down
Larval tubule50 ± 34 of 4 0.40Down
Larval hindgut68 ± 44 of 4 0.50Down
Larval fat body66 ± 34 of 4 0.50Down
Larval trachea166 ± 64 of 4 1.21Up
Larval carcass82 ± 64 of 4 0.60Down
S2 cells (growing)142 ± 24 of 4 1.03None
Whole fly137 ± 64 of 4

Looking for FBgn0030063. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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