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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030066 through 18771 annotations produced 1 hits



(CG1885):

Annotation Number : CG1885
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030066
Gbrowse : chrX:8793064-8794211 (-) // 100.0 //
Probeset : 1633740_at
Accessions : protein= NP_572507;, nucleotide= NM_132279;
Interpro : 0004852 // uroporphyrinogen-III synthase activity // inferred from sequence or structural similarity /// 0004852 // urop
FlyMine data for FBgn0030066.
BDGP gene expression has embryonic in situ data for CG1885: 4 pix of staining in 1 body parts.
Homophila reports that CG1885 is a close match (7e-26) to human gene UROS (NP_000366), a gene associated with Porphyria, congenital erythropoietic, 263700 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 24 of 4 1.50Up
Head40 54 of 4 1.00None
Eye30 24 of 4 0.74Down
Thoracicoabdominal ganglion45 44 of 4 1.10None
Salivary gland52 63 of 4 1.27None
Crop36 44 of 4 0.90None
Midgut31 34 of 4 0.80None
Tubule39 34 of 4 1.00None
Hindgut41 24 of 4 1.00None
Heart31 24 of 4 0.76Down
Fat body42 94 of 4 1.02None
Ovary43 24 of 4 1.10None
Testis64 14 of 4 1.60Up
Male accessory glands32 24 of 4 0.80Down
Virgin spermatheca26 64 of 4 0.64None
Mated spermatheca27 14 of 4 0.68Down
Adult carcass47 64 of 4 1.20None
Larval CNS42 74 of 4 1.03None
Larval Salivary gland35 24 of 4 0.86None
Larval midgut24 04 of 4 0.59Down
Larval tubule43 34 of 4 1.00None
Larval hindgut26 04 of 4 0.64Down
Larval fat body39 64 of 4 1.00None
Larval trachea16 34 of 4 0.41Down
Larval carcass30 14 of 4 0.75Down
S2 cells (growing)25 04 of 4 0.63Down
Whole fly41 14 of 4

Looking for FBgn0030066. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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