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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030074 through 18771 annotations produced 1 hits



(CG12662):

Annotation Number : CG12662
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030074
Gbrowse : chrX:8877700-8878216 (-) // 100.0 //
Probeset : 1640682_at
Accessions : protein= NP_572513;, nucleotide= NM_132285;
FlyMine data for FBgn0030074.
VDRC has 3 RNAi stocks for FBgn0030074 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 01 of 4 0.80None
Head9 ± 13 of 4 0.90None
Eye4 ± 00 of 4 0.47Down
Thoracicoabdominal ganglion10 ± 14 of 4 1.00None
Salivary gland17 ± 32 of 4 1.72None
Crop9 ± 04 of 4 1.00None
Midgut10 ± 21 of 4 1.10None
Tubule8 ± 01 of 4 0.80Down
Hindgut15 ± 24 of 4 1.60None
Heart2 ± 10 of 4 0.24Down
Fat body9 ± 42 of 4 0.96None
Ovary8 ± 14 of 4 0.90None
Testis5 ± 01 of 4 0.60Down
Male accessory glands11 ± 22 of 4 1.10None
Virgin spermatheca3 ± 10 of 4 0.30Down
Mated spermatheca5 ± 11 of 4 0.58None
Adult carcass12 ± 42 of 4 1.30None
Larval CNS7 ± 03 of 4 0.77None
Larval Salivary gland8 ± 21 of 4 0.83None
Larval midgut7 ± 11 of 4 0.71None
Larval tubule8 ± 11 of 4 0.90None
Larval hindgut10 ± 14 of 4 1.10None
Larval fat body12 ± 22 of 4 1.30None
Larval trachea5 ± 20 of 4 0.57Down
Larval carcass10 ± 01 of 4 1.04None
S2 cells (growing)6 ± 04 of 4 0.68Down
Whole fly9 ± 04 of 4

Looking for FBgn0030074. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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