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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030078 through 18771 annotations produced 1 hits



(CG10970):

Annotation Number : CG10970
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030078
Gbrowse : chrX:8963631-8965441 (-) // 100.0 //
Probeset : 1641011_at
Accessions : protein= NP_572517;, nucleotide= NM_132289;
Interpro : 0003998 // acylphosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred
FlyMine data for FBgn0030078.
BDGP gene expression has embryonic in situ data for CG10970: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0030078 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 13 of 4 0.70Down
Head3 ± 10 of 4 0.20Down
Eye4 ± 10 of 4 0.21Down
Thoracicoabdominal ganglion22 ± 04 of 4 1.10None
Salivary gland11 ± 31 of 4 0.58None
Crop13 ± 11 of 4 0.70None
Midgut9 ± 11 of 4 0.50Down
Tubule10 ± 01 of 4 0.50Down
Hindgut13 ± 10 of 4 0.70None
Heart9 ± 13 of 4 0.49Down
Fat body12 ± 61 of 4 0.59None
Ovary3 ± 00 of 4 0.20Down
Testis191 ± 64 of 4 9.50Up
Male accessory glands5 ± 20 of 4 0.30Down
Virgin spermatheca7 ± 10 of 4 0.37Down
Mated spermatheca7 ± 10 of 4 0.35Down
Adult carcass3 ± 10 of 4 0.20Down
Larval CNS14 ± 24 of 4 0.73None
Larval Salivary gland7 ± 10 of 4 0.36Down
Larval midgut11 ± 10 of 4 0.56Down
Larval tubule8 ± 11 of 4 0.40Down
Larval hindgut7 ± 10 of 4 0.38Down
Larval fat body16 ± 63 of 4 0.80None
Larval trachea5 ± 30 of 4 0.27Down
Larval carcass4 ± 10 of 4 0.22Down
S2 cells (growing)5 ± 01 of 4 0.29Down
Whole fly20 ± 23 of 4

Looking for FBgn0030078. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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