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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030082 through 18771 annotations produced 1 hits



HP1b (HP1b):

Annotation Number : CG7041
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030082
Gbrowse : chrX:8975095-8976394 (+) // 100.0 //
Probeset : 1635799_at
Accessions : protein= NP_001162713; /// NP_572521;, nucleotide= NM_001169242; /// NM_132293;
Pathway : 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotatio
Interpro : 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0003682 // chromatin binding // infe
FlyMine data for FBgn0030082.
BDGP gene expression has embryonic in situ data for HP1b: 4 pix of staining in 1 body parts.
BioGrid reports that CG7041 interacts with CG7104 .
TRiP has 1 RNAi stocks for FBgn0030082 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030082 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain187 14 of 4 1.10None
Head115 94 of 4 0.70Down
Eye181 74 of 4 1.06None
Thoracicoabdominal ganglion126 84 of 4 0.70Down
Salivary gland144 94 of 4 0.84None
Crop135 54 of 4 0.80Down
Midgut121 34 of 4 0.70Down
Tubule102 144 of 4 0.60Down
Hindgut118 44 of 4 0.70Down
Heart118 34 of 4 0.69Down
Fat body85 44 of 4 0.50Down
Ovary398 64 of 4 2.30Up
Testis76 14 of 4 0.40Down
Male accessory glands143 64 of 4 0.80Down
Virgin spermatheca142 34 of 4 0.83Down
Mated spermatheca168 24 of 4 0.98None
Adult carcass109 74 of 4 0.60Down
Larval CNS383 214 of 4 2.23Up
Larval Salivary gland166 54 of 4 0.97None
Larval midgut97 24 of 4 0.56Down
Larval tubule141 64 of 4 0.80Down
Larval hindgut111 14 of 4 0.64Down
Larval fat body109 164 of 4 0.60Down
Larval trachea265 234 of 4 1.54Up
Larval carcass150 54 of 4 0.87None
S2 cells (growing)399 54 of 4 2.32Up
Whole fly172 74 of 4

Looking for FBgn0030082. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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