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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030085 through 18771 annotations produced 1 hits



/// (CG32706 /// CG6999):

Annotation Number : CG6999
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030085 /// FBgn0052706
Gbrowse : chrX:8982503-8983278 (+) // 100.0 // /// chrX:8981276-8982042 (+) // 94.73 //
Probeset : 1641232_s_at
Accessions : protein= NP_572523; /// NP_727307;, nucleotide= NM_132295; /// NM_167175;
Pathway : via spliceosome // inferred from mutant phenotype"
Interpro : 0005634 // nucleus // inferred by curator
FlyMine data for FBgn0030085 /// FBgn0052706.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain353 ± 104 of 4 6.90Up
Head225 ± 154 of 4 4.40Up
Eye230 ± 154 of 4 4.51Up
Thoracicoabdominal ganglion611 ± 254 of 412.00Up
Salivary gland16 ± 30 of 4 0.33Down
Crop98 ± 54 of 4 1.90Up
Midgut31 ± 10 of 4 0.60Down
Tubule15 ± 10 of 4 0.30Down
Hindgut66 ± 44 of 4 1.30None
Heart128 ± 74 of 4 2.53Up
Fat body27 ± 50 of 4 0.55Down
Ovary9 ± 01 of 4 0.20Down
Testis378 ± 184 of 4 7.40Up
Male accessory glands36 ± 31 of 4 0.70None
Virgin spermatheca44 ± 10 of 4 0.87None
Mated spermatheca46 ± 31 of 4 0.91None
Adult carcass71 ± 10 of 4 1.40Up
Larval CNS125 ± 44 of 4 2.46Up
Larval Salivary gland20 ± 40 of 4 0.40Down
Larval midgut15 ± 30 of 4 0.29Down
Larval tubule123 ± 94 of 4 2.40Up
Larval hindgut44 ± 74 of 4 0.86None
Larval fat body100 ± 283 of 4 2.00None
Larval trachea42 ± 114 of 4 0.82None
Larval carcass26 ± 43 of 4 0.52Down
S2 cells (growing)554 ± 64 of 410.86Up
Whole fly51 ± 54 of 4

Looking for FBgn0030085. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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